PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22151-22200 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5894 | 97.8804 | 99.3088 | 61.8852 | 1293 | 28 | 1293 | 9 | 7 | 77.7778 | |
| ndellapenna-hhga | INDEL | I1_5 | * | hetalt | 97.0167 | 94.8280 | 99.3087 | 62.5367 | 10616 | 579 | 10630 | 74 | 67 | 90.5405 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.2126 | 99.1168 | 99.3086 | 83.9167 | 3591 | 32 | 3591 | 25 | 21 | 84.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.6381 | 88.5802 | 99.3086 | 86.9266 | 1148 | 148 | 1149 | 8 | 0 | 0.0000 | |
| jli-custom | SNP | ti | map_l250_m2_e0 | * | 98.3980 | 97.5040 | 99.3085 | 86.8596 | 4883 | 125 | 4883 | 34 | 18 | 52.9412 | |
| jli-custom | SNP | tv | map_l100_m2_e1 | het | 99.2181 | 99.1279 | 99.3085 | 65.9029 | 15799 | 139 | 15798 | 110 | 24 | 21.8182 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.5149 | 99.7222 | 99.3084 | 87.5709 | 718 | 2 | 718 | 5 | 4 | 80.0000 | |
| jli-custom | SNP | tv | map_l100_m2_e0 | het | 99.2133 | 99.1190 | 99.3078 | 65.8320 | 15638 | 139 | 15637 | 109 | 24 | 22.0183 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.2214 | 97.1584 | 99.3078 | 64.5805 | 5163 | 151 | 5165 | 36 | 29 | 80.5556 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 94.5232 | 90.1786 | 99.3077 | 80.7697 | 8383 | 913 | 3156 | 22 | 22 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1747 | 97.0673 | 99.3076 | 46.3948 | 10757 | 325 | 10757 | 75 | 72 | 96.0000 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.4452 | 99.5833 | 99.3075 | 87.8041 | 717 | 3 | 717 | 5 | 4 | 80.0000 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.4452 | 99.5833 | 99.3075 | 87.8041 | 717 | 3 | 717 | 5 | 4 | 80.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.8828 | 96.4992 | 99.3067 | 73.9583 | 1902 | 69 | 1862 | 13 | 8 | 61.5385 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.8828 | 96.4992 | 99.3067 | 73.9583 | 1902 | 69 | 1862 | 13 | 8 | 61.5385 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.5354 | 97.7762 | 99.3066 | 59.4807 | 8222 | 187 | 8306 | 58 | 19 | 32.7586 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.1342 | 96.9891 | 99.3066 | 64.2892 | 5154 | 160 | 5156 | 36 | 30 | 83.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | * | homalt | 80.8672 | 68.2033 | 99.3062 | 53.9537 | 1154 | 538 | 1145 | 8 | 7 | 87.5000 | |
| anovak-vg | SNP | tv | map_l100_m0_e0 | homalt | 87.5215 | 78.2371 | 99.3060 | 64.7976 | 3009 | 837 | 3005 | 21 | 17 | 80.9524 | |
| ghariani-varprowl | SNP | tv | map_l150_m2_e0 | homalt | 98.6939 | 98.0896 | 99.3057 | 75.8431 | 4005 | 78 | 4005 | 28 | 15 | 53.5714 | |
| hfeng-pmm1 | INDEL | D16_PLUS | HG002complexvar | homalt | 99.1334 | 98.9619 | 99.3056 | 74.5133 | 286 | 3 | 286 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5826 | 97.8702 | 99.3056 | 66.7018 | 19162 | 417 | 19162 | 134 | 6 | 4.4776 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5826 | 97.8702 | 99.3056 | 66.7018 | 19162 | 417 | 19162 | 134 | 6 | 4.4776 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.3739 | 97.4595 | 99.3056 | 60.7094 | 5179 | 135 | 5148 | 36 | 21 | 58.3333 | |
| hfeng-pmm3 | INDEL | D16_PLUS | HG002complexvar | homalt | 99.1334 | 98.9619 | 99.3056 | 74.9565 | 286 | 3 | 286 | 2 | 1 | 50.0000 | |
| anovak-vg | SNP | * | map_l125_m2_e1 | homalt | 89.7095 | 81.8047 | 99.3055 | 67.9368 | 14342 | 3190 | 14156 | 99 | 83 | 83.8384 | |
| qzeng-custom | SNP | ti | map_l125_m2_e1 | homalt | 83.4603 | 71.9759 | 99.3054 | 66.9858 | 8247 | 3211 | 8149 | 57 | 56 | 98.2456 | |
| gduggal-snapvard | SNP | ti | * | * | 99.1158 | 98.9272 | 99.3052 | 22.3384 | 2063143 | 22374 | 2054412 | 14373 | 2372 | 16.5032 | |
| astatham-gatk | INDEL | I16_PLUS | HG002complexvar | * | 98.7711 | 98.2429 | 99.3050 | 67.4541 | 1286 | 23 | 1286 | 9 | 9 | 100.0000 | |
| ckim-dragen | INDEL | * | * | het | 99.4503 | 99.5962 | 99.3048 | 61.2221 | 193349 | 784 | 192841 | 1350 | 335 | 24.8148 | |
| ckim-vqsr | SNP | ti | segdup | het | 98.9319 | 98.5619 | 99.3047 | 94.5420 | 11857 | 173 | 11855 | 83 | 4 | 4.8193 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 89.8927 | 82.1104 | 99.3046 | 32.2337 | 1354 | 295 | 1428 | 10 | 10 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.0342 | 98.7654 | 99.3045 | 87.2122 | 1280 | 16 | 1285 | 9 | 9 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5345 | 99.7661 | 99.3039 | 36.1103 | 2133 | 5 | 2140 | 15 | 2 | 13.3333 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 99.6508 | 100.0000 | 99.3039 | 77.5052 | 13 | 0 | 428 | 3 | 2 | 66.6667 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.1282 | 98.9531 | 99.3039 | 35.7393 | 7278 | 77 | 7276 | 51 | 3 | 5.8824 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4422 | 99.5809 | 99.3038 | 58.0347 | 4277 | 18 | 4279 | 30 | 5 | 16.6667 | |
| astatham-gatk | SNP | tv | map_l150_m0_e0 | * | 93.7784 | 88.8356 | 99.3035 | 83.1642 | 3708 | 466 | 3707 | 26 | 6 | 23.0769 | |
| hfeng-pmm1 | SNP | tv | map_l125_m0_e0 | * | 99.1084 | 98.9142 | 99.3035 | 75.2093 | 6559 | 72 | 6558 | 46 | 13 | 28.2609 | |
| jpowers-varprowl | SNP | * | * | het | 99.3161 | 99.3290 | 99.3033 | 25.1238 | 1861010 | 12572 | 1861335 | 13059 | 459 | 3.5148 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e1 | het | 95.2326 | 91.4826 | 99.3031 | 83.5057 | 290 | 27 | 285 | 2 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | segdup | homalt | 98.3768 | 97.4676 | 99.3031 | 90.1749 | 3156 | 82 | 3135 | 22 | 21 | 95.4545 | |
| gduggal-bwavard | INDEL | * | map_l100_m1_e0 | homalt | 95.9129 | 92.7465 | 99.3031 | 75.5380 | 1138 | 89 | 1140 | 8 | 5 | 62.5000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.2899 | 99.2769 | 99.3030 | 49.7051 | 961 | 7 | 8976 | 63 | 26 | 41.2698 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.6413 | 97.9883 | 99.3029 | 72.0487 | 92549 | 1900 | 92457 | 649 | 588 | 90.6009 | |
| ckim-gatk | INDEL | I16_PLUS | HG002complexvar | * | 98.6154 | 97.9374 | 99.3029 | 66.7953 | 1282 | 27 | 1282 | 9 | 9 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.0424 | 98.7834 | 99.3028 | 71.2490 | 45146 | 556 | 45149 | 317 | 104 | 32.8076 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.0424 | 98.7834 | 99.3028 | 71.2490 | 45146 | 556 | 45149 | 317 | 104 | 32.8076 | |
| cchapple-custom | INDEL | * | map_l125_m1_e0 | homalt | 98.2049 | 97.1311 | 99.3026 | 83.9597 | 711 | 21 | 712 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.0405 | 84.0481 | 99.3020 | 38.2843 | 3214 | 610 | 3272 | 23 | 23 | 100.0000 | |