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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 437 438 439 440 441 442 443 444 445 ... 1720 1721 » 22001-22050 / 86044 show all
jli-custom	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5913	99.8586	99.3255	71.8824	3532	5	3534	24	24	100.0000
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	95.1577	91.3256	99.3255	38.6854	2990	284	8246	56	45	80.3571
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.0280	94.8346	99.3253	40.5686	6334	345	11482	78	47	60.2564
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.2066	99.0882	99.3253	55.9755	11193	103	11189	76	58	76.3158
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.6157	97.9161	99.3253	64.1874	3383	72	3386	23	21	91.3043
gduggal-snapvard	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	98.6458	97.9754	99.3253	54.0950	1355	28	1325	9	5	55.5556
astatham-gatk	INDEL	*	map_siren	homalt	99.4364	99.5480	99.3251	81.5279	2643	12	2649	18	12	66.6667
asubramanian-gatk	INDEL	*	HG002complexvar	het	98.7623	98.2061	99.3248	58.2604	45383	829	45014	306	59	19.2810
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.1853	99.0462	99.3248	77.9742	1350	13	1324	9	2	22.2222
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	97.3336	95.4207	99.3247	69.8100	11023	529	11031	75	43	57.3333
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	97.3336	95.4207	99.3247	69.8100	11023	529	11031	75	43	57.3333
gduggal-bwafb	INDEL	D1_5	map_l125_m0_e0	homalt	99.3243	99.3243	99.3243	89.8769	147	1	147	1	1	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l125_m0_e0	homalt	99.3243	99.3243	99.3243	85.2590	147	1	147	1	1	100.0000
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	96.5568	93.9394	99.3243	87.0289	124	8	147	1	1	100.0000
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3396	99.3548	99.3243	81.1705	154	1	147	1	0	0.0000
asubramanian-gatk	INDEL	*	map_l150_m2_e0	homalt	95.2388	91.4761	99.3243	90.2332	440	41	441	3	1	33.3333
jli-custom	INDEL	I1_5	map_l150_m1_e0	het	98.6543	97.9933	99.3243	88.5227	293	6	294	2	0	0.0000
hfeng-pmm3	INDEL	D1_5	map_l125_m0_e0	homalt	99.3243	99.3243	99.3243	84.1880	147	1	147	1	1	100.0000
dgrover-gatk	SNP	ti	map_l100_m0_e0	*	99.2854	99.2467	99.3242	70.6721	21607	164	21604	147	34	23.1293
ghariani-varprowl	SNP	ti	HG002complexvar	*	99.5322	99.7412	99.3241	19.7678	507113	1316	507283	3452	789	22.8563
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.1976	99.0717	99.3238	51.2490	6617	62	6610	45	42	93.3333
asubramanian-gatk	SNP	tv	func_cds	het	99.4171	99.5107	99.3236	42.1899	2644	13	2643	18	0	0.0000
gduggal-bwaplat	SNP	*	map_l125_m0_e0	*	63.0515	46.1852	99.3234	91.8350	8953	10432	8955	61	21	34.4262
raldana-dualsentieon	SNP	tv	map_l100_m1_e0	*	99.3984	99.4735	99.3234	65.0677	24372	129	24368	166	5	3.0121
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	96.7955	94.3933	99.3232	30.5115	1128	67	1174	8	8	100.0000
ckim-isaac	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.5480	97.7849	99.3232	55.6830	27634	626	27589	188	94	50.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	96.7955	94.3933	99.3232	30.5115	1128	67	1174	8	8	100.0000
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.2098	99.0971	99.3228	35.3285	439	4	440	3	2	66.6667
rpoplin-dv42	INDEL	*	func_cds	*	98.8729	98.4270	99.3228	93.2232	438	7	440	3	3	100.0000
asubramanian-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.3228	99.3228	99.3228	34.5643	440	3	440	3	3	100.0000
asubramanian-gatk	INDEL	*	func_cds	*	98.8729	98.4270	99.3228	86.9360	438	7	440	3	1	33.3333
ltrigg-rtg2	INDEL	I1_5	HG002compoundhet	*	98.0840	96.8760	99.3225	65.2361	11970	386	11875	81	56	69.1358
rpoplin-dv42	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.0666	85.7988	99.3224	30.2027	2030	336	2052	14	14	100.0000
dgrover-gatk	INDEL	D16_PLUS	*	hetalt	96.8869	94.5680	99.3224	39.0920	1828	105	2052	14	14	100.0000
anovak-vg	SNP	ti	map_l125_m0_e0	homalt	86.0648	75.9296	99.3223	69.5933	3410	1081	3371	23	21	91.3043
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.0697	98.8184	99.3222	69.4679	30775	368	30774	210	73	34.7619
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.0697	98.8184	99.3222	69.4679	30775	368	30774	210	73	34.7619
egarrison-hhga	SNP	tv	map_l250_m2_e1	het	98.1200	96.9466	99.3222	87.5276	1905	60	1905	13	5	38.4615
gduggal-bwavard	INDEL	*	map_l100_m2_e0	homalt	95.9415	92.7835	99.3220	77.0294	1170	91	1172	8	5	62.5000
hfeng-pmm1	INDEL	D6_15	*	homalt	99.4474	99.5732	99.3220	50.6075	6299	27	6299	43	42	97.6744
ndellapenna-hhga	SNP	tv	map_l250_m2_e0	*	97.9240	96.5649	99.3219	86.9151	2783	99	2783	19	10	52.6316
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.1314	98.9416	99.3219	67.8823	6170	66	6298	43	25	58.1395
anovak-vg	SNP	ti	map_l150_m2_e0	homalt	88.3955	79.6350	99.3218	72.4413	6065	1551	6004	41	36	87.8049
astatham-gatk	INDEL	D16_PLUS	*	hetalt	96.8051	94.4128	99.3217	38.8807	1825	108	2050	14	14	100.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.9108	94.6142	99.3217	39.0251	1827	104	2050	14	14	100.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.9108	94.6142	99.3217	39.0251	1827	104	2050	14	14	100.0000
qzeng-custom	SNP	ti	map_l125_m2_e0	homalt	83.3237	71.7644	99.3217	66.9963	8151	3207	8054	55	54	98.1818
bgallagher-sentieon	INDEL	*	*	*	99.2678	99.2143	99.3213	59.6036	341835	2707	341703	2335	1924	82.3983
ghariani-varprowl	SNP	tv	map_siren	homalt	99.3038	99.2865	99.3211	57.8404	17117	123	17117	117	71	60.6838
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.8289	94.4588	99.3210	38.8312	1824	107	2048	14	14	100.0000

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