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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
21901-21950 / 86044 show all
jli-customSNPtimap_l100_m0_e0het
98.9518
98.5697
99.3369
65.4782
13783200137839228
30.4348
gduggal-bwaplatSNPtimap_l250_m1_e0het
57.3348
40.2965
99.3367
97.5609
11961772119882
25.0000
dgrover-gatkSNP*map_l125_m2_e0*
99.3279
99.3194
99.3363
74.2156
464053184639931069
22.2581
ltrigg-rtg1INDELD1_5map_l150_m1_e0het
95.8130
92.5311
99.3363
77.5012
4463644930
0.0000
jli-customSNPtvmap_l150_m2_e0*
99.0817
98.8287
99.3360
73.0560
11222133112217523
30.6667
gduggal-snapfbSNPtvmap_l150_m2_e0homalt
97.2621
95.2731
99.3359
82.3744
38901933889266
23.0769
rpoplin-dv42INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
98.8202
98.3099
99.3359
67.6190
104718104775
71.4286
hfeng-pmm1INDELD1_5map_sirenhet
98.8087
98.2872
99.3357
77.5055
2238392243150
0.0000
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
95.3716
91.7119
99.3355
36.2626
1184107119688
100.0000
jmaeng-gatkSNP*HG002complexvarhetalt
97.8723
96.4516
99.3355
40.5138
2991129922
100.0000
jmaeng-gatkSNPtvHG002complexvarhetalt
97.8723
96.4516
99.3355
40.5138
2991129922
100.0000
ltrigg-rtg1INDELI1_5map_l100_m0_e0het
95.5404
92.0245
99.3355
73.2206
3002629920
0.0000
rpoplin-dv42INDELI1_5map_l150_m2_e0het
97.6995
96.1165
99.3355
90.0232
2971229921
50.0000
gduggal-bwavardSNPtvsegduphomalt
98.3926
97.4676
99.3354
90.2442
31568231392119
90.4762
eyeh-varpipeSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4099
99.4850
99.3350
55.8574
100455294106321
33.3333
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4405
99.5463
99.3348
79.5031
1075249107527213
18.0556
hfeng-pmm2INDELD16_PLUSHG002complexvarhetalt
96.5553
93.9271
99.3348
48.1609
2321544833
100.0000
bgallagher-sentieonINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.9847
98.6372
99.3347
77.0324
1520211493104
40.0000
astatham-gatkSNPtimap_l150_m0_e0het
89.8677
82.0483
99.3346
85.7819
41829154180289
32.1429
hfeng-pmm2SNPtimap_l100_m2_e1het
99.3427
99.3508
99.3346
69.0698
307592013075220616
7.7670
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5489
99.7642
99.3346
49.7344
253862538170
0.0000
jpowers-varprowlSNP*HG002complexvarhomalt
99.6393
99.9463
99.3342
21.7803
28841915528854219341452
75.0776
ltrigg-rtg2INDELD6_15*het
99.2141
99.0942
99.3342
52.7094
11487105113397626
34.2105
anovak-vgSNP*func_cdshomalt
99.1150
98.8967
99.3342
20.4124
69027768634641
89.1304
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.0040
98.6760
99.3342
81.0100
23853223871610
62.5000
jli-customSNP*map_l125_m1_e0het
99.0623
98.7919
99.3341
68.8001
280493432804618854
28.7234
jli-customSNP*map_l125_m0_e0*
98.9095
98.4885
99.3340
69.7637
190922931909212848
37.5000
qzeng-customSNPtimap_l150_m1_e0homalt
79.2986
65.9888
99.3340
70.0903
4835249247733232
100.0000
cchapple-customSNPtvlowcmp_SimpleRepeat_diTR_11to50het
99.3270
99.3199
99.3340
66.8350
3067213132219
42.8571
asubramanian-gatkINDELI1_5segdup*
98.7667
98.2059
99.3340
95.0336
104019104472
28.5714
anovak-vgSNP*map_l250_m2_e0homalt
83.9868
72.7476
99.3333
88.4225
19547321937139
69.2308
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
98.6755
98.0263
99.3333
91.3594
149314911
100.0000
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
90.9072
83.7989
99.3333
37.2385
1502914911
100.0000
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10*
97.3706
95.4839
99.3333
79.5640
148714911
100.0000
gduggal-bwafbINDELI6_15map_sirenhet
85.3548
74.8252
99.3333
74.6193
1073614911
100.0000
jpowers-varprowlSNPtvmap_l150_m1_e0homalt
98.7251
98.1247
99.3330
75.8368
38727438722616
61.5385
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.5860
95.8996
99.3328
33.9394
114649119188
100.0000
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.3829
99.4334
99.3324
81.4625
68443968444614
30.4348
cchapple-customINDEL**homalt
99.5578
99.7843
99.3323
55.6558
124902270124673838810
96.6587
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.1200
95.0044
99.3320
25.8972
654234465434443
97.7273
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.3536
99.3753
99.3320
81.7241
68404368404615
32.6087
ckim-dragenINDELI1_5*het
99.4703
99.6091
99.3319
60.8221
7873230978650529129
24.3856
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.4624
99.5933
99.3319
58.5091
83263483265656
100.0000
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.4624
99.5933
99.3319
58.5091
83263483265656
100.0000
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
96.9781
94.7333
99.3319
50.0000
282415728251916
84.2105
bgallagher-sentieonINDEL*func_cds*
99.5531
99.7753
99.3318
44.7724
444144631
33.3333
astatham-gatkINDEL*func_cds*
99.5531
99.7753
99.3318
44.9080
444144631
33.3333
dgrover-gatkINDEL*func_cds*
99.5531
99.7753
99.3318
45.1100
444144631
33.3333
dgrover-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.1784
99.0254
99.3318
68.0069
38613838652615
57.6923
gduggal-bwavardINDEL*map_l100_m2_e1homalt
95.8810
92.6620
99.3317
77.1434
118794118985
62.5000