PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21801-21850 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | ti | map_l125_m1_e0 | homalt | 82.9138 | 71.1453 | 99.3472 | 63.5077 | 7858 | 3187 | 7762 | 51 | 50 | 98.0392 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1852 | 99.0239 | 99.3471 | 78.2176 | 913 | 9 | 913 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | SNP | tv | map_l250_m2_e1 | homalt | 98.0718 | 96.8288 | 99.3471 | 88.1389 | 916 | 30 | 913 | 6 | 4 | 66.6667 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6181 | 99.8906 | 99.3471 | 70.2781 | 913 | 1 | 913 | 6 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_siren | * | 98.3998 | 97.4709 | 99.3466 | 77.4486 | 2929 | 76 | 2889 | 19 | 3 | 15.7895 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.7541 | 96.2121 | 99.3464 | 87.0886 | 127 | 5 | 152 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.8690 | 94.5122 | 99.3464 | 73.7564 | 155 | 9 | 152 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.3734 | 97.4194 | 99.3464 | 82.9050 | 151 | 4 | 152 | 1 | 0 | 0.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 98.0107 | 96.7105 | 99.3464 | 91.3803 | 147 | 5 | 152 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1340 | 98.9224 | 99.3464 | 71.8750 | 459 | 5 | 456 | 3 | 1 | 33.3333 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5785 | 99.8122 | 99.3458 | 67.3382 | 1063 | 2 | 1063 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l125_m1_e0 | het | 99.1441 | 98.9434 | 99.3457 | 70.2153 | 18073 | 193 | 18069 | 119 | 74 | 62.1849 | |
| ghariani-varprowl | SNP | tv | map_l100_m2_e0 | homalt | 99.1079 | 98.8713 | 99.3457 | 66.7718 | 9110 | 104 | 9110 | 60 | 39 | 65.0000 | |
| jli-custom | SNP | tv | map_l150_m1_e0 | * | 99.0626 | 98.7812 | 99.3456 | 71.0917 | 10779 | 133 | 10778 | 71 | 23 | 32.3944 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.4326 | 95.5919 | 99.3455 | 89.4983 | 759 | 35 | 759 | 5 | 5 | 100.0000 | |
| jli-custom | SNP | * | map_l125_m2_e1 | het | 99.0901 | 98.8360 | 99.3454 | 70.6523 | 29295 | 345 | 29292 | 193 | 54 | 27.9793 | |
| ghariani-varprowl | SNP | tv | map_l125_m1_e0 | homalt | 98.8683 | 98.3959 | 99.3453 | 69.2128 | 5766 | 94 | 5766 | 38 | 24 | 63.1579 | |
| gduggal-bwaplat | SNP | tv | map_l125_m0_e0 | het | 64.9641 | 48.2618 | 99.3452 | 94.0434 | 2124 | 2277 | 2124 | 14 | 5 | 35.7143 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.0824 | 98.8212 | 99.3451 | 39.8485 | 3940 | 47 | 3944 | 26 | 15 | 57.6923 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.2482 | 95.2381 | 99.3450 | 30.3951 | 440 | 22 | 455 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4536 | 99.5624 | 99.3450 | 70.1434 | 910 | 4 | 910 | 6 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | HG002complexvar | homalt | 99.5756 | 99.8076 | 99.3448 | 56.8540 | 26975 | 52 | 26988 | 178 | 171 | 96.0674 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4843 | 99.6244 | 99.3446 | 67.0980 | 1061 | 4 | 1061 | 7 | 7 | 100.0000 | |
| jli-custom | SNP | tv | map_l150_m2_e1 | * | 99.0935 | 98.8437 | 99.3446 | 73.0880 | 11369 | 133 | 11368 | 75 | 23 | 30.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_siren | het | 99.0766 | 98.8102 | 99.3445 | 82.4495 | 1661 | 20 | 1667 | 11 | 1 | 9.0909 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e1 | homalt | 97.2966 | 95.3314 | 99.3444 | 82.3553 | 3941 | 193 | 3940 | 26 | 6 | 23.0769 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.4204 | 95.5696 | 99.3443 | 73.5702 | 302 | 14 | 303 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | HG002complexvar | * | 95.8482 | 92.5898 | 99.3443 | 64.3692 | 1212 | 97 | 1212 | 8 | 4 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m2_e0 | het | 98.5329 | 97.7346 | 99.3443 | 89.5476 | 302 | 7 | 303 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | * | map_l250_m0_e0 | homalt | 97.8208 | 96.3434 | 99.3443 | 91.6882 | 606 | 23 | 606 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2927 | 99.2413 | 99.3442 | 65.4836 | 12426 | 95 | 12270 | 81 | 75 | 92.5926 | |
| hfeng-pmm3 | SNP | * | map_l125_m0_e0 | * | 99.2955 | 99.2468 | 99.3441 | 74.5016 | 19239 | 146 | 19236 | 127 | 18 | 14.1732 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4371 | 99.5305 | 99.3440 | 66.8736 | 1060 | 5 | 1060 | 7 | 7 | 100.0000 | |
| asubramanian-gatk | SNP | * | map_l250_m2_e0 | het | 33.8604 | 20.4082 | 99.3440 | 98.5469 | 1060 | 4134 | 1060 | 7 | 1 | 14.2857 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.0454 | 96.7804 | 99.3438 | 49.5652 | 30962 | 1030 | 30885 | 204 | 187 | 91.6667 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.5520 | 95.8237 | 99.3437 | 50.3216 | 16933 | 738 | 16803 | 111 | 74 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.5520 | 95.8237 | 99.3437 | 50.3216 | 16933 | 738 | 16803 | 111 | 74 | 66.6667 | |
| jli-custom | SNP | * | map_l150_m0_e0 | * | 98.7204 | 98.1051 | 99.3435 | 75.0933 | 11804 | 228 | 11804 | 78 | 29 | 37.1795 | |
| hfeng-pmm3 | INDEL | D16_PLUS | HG002complexvar | hetalt | 96.5594 | 93.9271 | 99.3435 | 47.5316 | 232 | 15 | 454 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.8030 | 98.2684 | 99.3435 | 58.5675 | 454 | 8 | 454 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4524 | 99.5614 | 99.3435 | 66.3352 | 908 | 4 | 908 | 6 | 4 | 66.6667 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9156 | 98.4914 | 99.3435 | 72.0489 | 457 | 7 | 454 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.8903 | 96.4792 | 99.3433 | 38.3411 | 9125 | 333 | 9076 | 60 | 45 | 75.0000 | |
| qzeng-custom | INDEL | I1_5 | HG002complexvar | hetalt | 90.5910 | 83.2561 | 99.3432 | 68.2647 | 1437 | 289 | 605 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e1 | * | 99.2936 | 99.2446 | 99.3427 | 66.1225 | 25092 | 191 | 25088 | 166 | 80 | 48.1928 | |
| rpoplin-dv42 | SNP | ti | map_l150_m1_e0 | * | 99.1152 | 98.8890 | 99.3424 | 73.3921 | 19493 | 219 | 19489 | 129 | 91 | 70.5426 | |
| anovak-vg | SNP | * | map_l100_m2_e1 | homalt | 91.8309 | 85.3756 | 99.3422 | 61.4163 | 23731 | 4065 | 23410 | 155 | 133 | 85.8065 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.5839 | 97.8372 | 99.3421 | 60.4167 | 769 | 17 | 755 | 5 | 2 | 40.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | HG002complexvar | hetalt | 96.7722 | 94.3320 | 99.3421 | 47.8261 | 233 | 14 | 453 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | HG002compoundhet | hetalt | 78.6021 | 65.0263 | 99.3421 | 43.5644 | 1361 | 732 | 1359 | 9 | 8 | 88.8889 | |