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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
21551-21600 / 86044 show all
ndellapenna-hhgaINDELD1_5func_cds*
99.6865
100.0000
99.3750
33.0544
159015910
0.0000
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_diTR_11to50het
99.2624
99.1501
99.3749
64.2935
6183536200395
12.8205
hfeng-pmm2SNPtvmap_l100_m2_e0*
99.4872
99.6005
99.3742
68.8945
249331002492915717
10.8280
jli-customINDELD16_PLUS*hetalt
97.3443
95.3958
99.3741
36.1316
18448920641313
100.0000
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6078
99.8428
99.3740
52.6140
254042540162
12.5000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6078
99.8428
99.3740
51.5542
254042540161
6.2500
rpoplin-dv42SNPtimap_l125_m2_e1het
99.1705
98.9679
99.3738
71.8144
188901971888611974
62.1849
rpoplin-dv42INDELD6_15*hetalt
95.9844
92.8187
99.3737
29.7010
758758776164847
97.9167
jpowers-varprowlSNPtvmap_l100_m2_e1homalt
99.1488
98.9250
99.3737
68.5771
920210092025841
70.6897
gduggal-bwaplatSNPtimap_l150_m2_e0*
70.0796
54.1244
99.3737
90.4802
111029410111067025
35.7143
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
86.4817
76.5507
99.3735
30.6252
202462020621311
84.6154
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.3685
95.4428
99.3735
36.0555
18438820621313
100.0000
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.3685
95.4428
99.3735
36.0555
18438820621313
100.0000
mlin-fermikitSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.0073
98.6439
99.3734
43.8166
61838561853938
97.4359
ckim-dragenSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
98.7380
98.1108
99.3732
66.6039
4674904756307
23.3333
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.0306
96.7239
99.3730
52.6355
6202163444
100.0000
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.2191
97.0917
99.3729
56.5754
26047826941717
100.0000
hfeng-pmm3SNP*map_l150_m2_e0het
99.2915
99.2103
99.3729
76.6202
199741591996812613
10.3175
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.4424
99.5121
99.3729
70.5814
454792234547928731
10.8014
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.4424
99.5121
99.3729
70.5814
454792234547928731
10.8014
ltrigg-rtg2INDELD1_5map_l125_m0_e0*
97.4313
95.5645
99.3724
79.4409
4742247531
33.3333
ckim-dragenINDELI1_5**
99.2774
99.1830
99.3720
58.7161
1494331231149372944540
57.2034
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.3717
99.3717
99.3717
79.9201
949694965
83.3333
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.7392
98.1151
99.3713
57.1912
3081659230820195176
90.2564
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.7392
98.1151
99.3713
57.1912
3081659230820195176
90.2564
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
90.5668
83.1956
99.3711
46.1017
3026131621
50.0000
gduggal-bwaplatINDEL*map_l150_m0_e0het
63.2000
46.3343
99.3711
97.9552
15818315810
0.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.4336
99.4962
99.3711
89.5036
790479055
100.0000
ckim-vqsrSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3676
99.3641
99.3711
65.4796
275021762749217418
10.3448
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.5768
95.8462
99.3711
22.4390
6232763244
100.0000
cchapple-customINDELI1_5map_l125_m1_e0homalt
98.6094
97.8593
99.3711
81.7451
320731621
50.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.4336
99.4962
99.3711
89.1468
790479055
100.0000
ltrigg-rtg1INDELD1_5func_cds*
99.0556
98.7421
99.3711
31.1688
157215810
0.0000
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.2060
99.0415
99.3711
52.8190
310331622
100.0000
gduggal-bwavardSNP*map_l250_m1_e0homalt
98.2519
97.1579
99.3708
87.2425
23937023691510
66.6667
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
77.1804
63.0915
99.3707
35.9250
8853517990005756
98.2456
gduggal-snapvardINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
74.0214
58.9765
99.3707
59.0788
20861451124747971
89.8734
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.8006
90.6323
99.3707
28.9674
15481601579109
90.0000
hfeng-pmm3SNPtisegduphet
99.5602
99.7506
99.3705
89.3230
120003011998760
0.0000
dgrover-gatkSNPtimap_l100_m2_e1het
99.4091
99.4477
99.3705
70.9092
307891713078219539
20.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.3703
99.3703
99.3703
89.2862
789578955
100.0000
gduggal-bwaplatSNPtvmap_l250_m1_e0het
52.1057
35.3106
99.3701
97.9946
631115663141
25.0000
ndellapenna-hhgaSNP*map_l250_m2_e1het
97.6025
95.8967
99.3701
87.9415
504821650483214
43.7500
jli-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5883
99.8077
99.3700
59.7371
555241075552035227
7.6705
rpoplin-dv42INDELI1_5map_l125_m1_e0het
98.1263
96.9136
99.3697
85.6928
4711547332
66.6667
hfeng-pmm3INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5197
99.6701
99.3697
56.7552
36261236262321
91.3043
gduggal-bwaplatINDEL*map_l150_m2_e0*
71.6038
55.9659
99.3695
96.1005
78862078851
20.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.3069
99.2443
99.3695
89.2982
788678855
100.0000
hfeng-pmm2SNPtimap_l125_m2_e1*
99.4245
99.4799
99.3693
73.2743
304101593040619323
11.9171
raldana-dualsentieonSNPtvsegdup*
99.5671
99.7656
99.3693
91.0002
8512208508546
11.1111