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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 425 426 427 428 429 430 431 432 433 ... 1720 1721 » 21401-21450 / 86044 show all
bgallagher-sentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	94.9615	90.9091	99.3921	58.2487	310	31	327	2	2	100.0000
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.2805	91.4956	99.3921	56.4238	312	29	327	2	2	100.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	*	97.0727	94.8590	99.3921	62.0781	2288	124	2289	14	8	57.1429
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.7911	98.1976	99.3919	80.6257	1471	27	1471	9	6	66.6667
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	*	98.2538	97.1415	99.3919	50.2946	35546	1046	35469	217	179	82.4885
mlin-fermikit	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	77.1546	63.0485	99.3919	33.0569	8678	5086	8826	54	53	98.1481
cchapple-custom	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.0504	96.7449	99.3916	61.8066	1278	43	1307	8	8	100.0000
ndellapenna-hhga	SNP	tv	segdup	*	99.4730	99.5546	99.3915	90.2986	8494	38	8494	52	18	34.6154
raldana-dualsentieon	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6721	99.9543	99.3915	75.2467	21889	10	21889	134	133	99.2537
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3915	99.3915	99.3915	54.5622	490	3	490	3	2	66.6667
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5273	99.6634	99.3915	39.2247	4737	16	4737	29	28	96.5517
ltrigg-rtg1	INDEL	D1_5	map_l150_m2_e1	het	96.0425	92.9119	99.3915	79.1102	485	37	490	3	0	0.0000
jli-custom	SNP	ti	map_l125_m0_e0	*	98.9692	98.5504	99.3915	69.4510	12577	185	12577	77	30	38.9610
dgrover-gatk	SNP	tv	map_l100_m2_e1	*	99.4445	99.4977	99.3914	69.7839	25156	127	25152	154	29	18.8312
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	91.6408	85.0117	99.3911	29.8196	1452	256	1469	9	9	100.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.4861	99.5813	99.3911	58.2577	8325	35	8325	51	50	98.0392
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4861	99.5813	99.3911	58.2577	8325	35	8325	51	50	98.0392
ckim-vqsr	SNP	ti	map_l100_m2_e1	*	78.0470	64.2498	99.3903	82.5096	31794	17691	31789	195	15	7.6923
ckim-vqsr	INDEL	I1_5	map_l125_m1_e0	homalt	99.5420	99.6942	99.3902	83.8741	326	1	326	2	1	50.0000
hfeng-pmm3	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.1550	96.9500	99.3902	75.7157	1494	47	1467	9	4	44.4444
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	88.0509	79.0340	99.3902	32.6949	1440	382	1467	9	8	88.8889
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.9879	98.5887	99.3902	70.7665	978	14	978	6	1	16.6667
gduggal-bwavard	INDEL	D1_5	map_l125_m1_e0	homalt	97.5113	95.7020	99.3902	79.6400	334	15	326	2	2	100.0000
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.8138	96.2869	99.3900	32.9111	6431	248	13686	84	81	96.4286
gduggal-snapplat	SNP	*	func_cds	het	99.3276	99.2653	99.3900	36.7079	11079	82	11079	68	4	5.8824
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	94.3952	89.8785	99.3897	87.2026	2442	275	2443	15	3	20.0000
asubramanian-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	97.6198	95.9122	99.3894	60.1406	1267	54	1465	9	5	55.5556
dgrover-gatk	SNP	tv	map_l100_m2_e0	*	99.4410	99.4927	99.3893	69.7626	24906	127	24902	153	29	18.9542
hfeng-pmm1	SNP	*	map_l125_m0_e0	*	99.1962	99.0044	99.3888	74.3664	19192	193	19189	118	33	27.9661
anovak-vg	SNP	ti	func_cds	homalt	99.1630	98.9384	99.3887	18.9378	5219	56	5203	32	30	93.7500
ckim-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1690	98.9505	99.3886	67.1606	4714	50	4714	29	10	34.4828
gduggal-bwaplat	SNP	ti	map_l125_m1_e0	*	75.1104	60.3648	99.3885	86.1772	17708	11627	17715	109	33	30.2752
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4772	99.5662	99.3884	73.4002	918	4	975	6	4	66.6667
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	88.3435	79.5079	99.3884	37.9338	2165	558	2275	14	13	92.8571
jlack-gatk	INDEL	I16_PLUS	HG002complexvar	hetalt	94.5436	90.1493	99.3884	68.8275	302	33	325	2	1	50.0000
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.8343	98.2863	99.3884	71.8022	975	17	975	6	2	33.3333
rpoplin-dv42	INDEL	I1_5	map_l125_m1_e0	homalt	99.3884	99.3884	99.3884	83.3672	325	2	325	2	1	50.0000
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6929	100.0000	99.3878	67.4419	487	0	487	3	1	33.3333
rpoplin-dv42	SNP	*	map_l100_m1_e0	het	99.2638	99.1402	99.3876	64.2170	44969	390	44957	277	141	50.9025
jli-custom	INDEL	I6_15	*	het	98.3728	97.3787	99.3875	54.1020	9770	263	9736	60	34	56.6667
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.2813	99.1758	99.3872	70.5555	3730	31	3730	23	22	95.6522
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.2813	99.1758	99.3872	70.5555	3730	31	3730	23	22	95.6522
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.1870	98.9876	99.3871	63.6368	8311	85	8270	51	43	84.3137
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	92.0184	85.6671	99.3870	87.2881	1297	217	1297	8	3	37.5000
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3181	99.2492	99.3870	72.2871	1322	10	1297	8	6	75.0000
gduggal-bwafb	SNP	ti	func_cds	*	99.6673	99.9492	99.3869	27.6810	13780	7	13780	85	2	2.3529
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.2411	99.0960	99.3867	70.6527	3727	34	3727	23	22	95.6522
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.2411	99.0960	99.3867	70.6527	3727	34	3727	23	22	95.6522
rpoplin-dv42	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.1408	94.9941	99.3867	29.3238	6471	341	6482	40	39	97.5000
hfeng-pmm1	INDEL	D1_5	map_l250_m1_e0	*	97.0060	94.7368	99.3865	93.6477	162	9	162	1	0	0.0000

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