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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 422 423 424 425 426 427 428 429 430 ... 1720 1721 » 21251-21300 / 86044 show all
ltrigg-rtg2	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	98.1071	96.8411	99.4065	70.7611	14930	487	15409	92	91	98.9130
rpoplin-dv42	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.3822	95.4389	99.4064	62.1615	8872	424	8875	53	52	98.1132
astatham-gatk	SNP	tv	map_l250_m1_e0	homalt	98.5866	97.7804	99.4062	85.3845	837	19	837	5	4	80.0000
qzeng-custom	SNP	*	segdup	homalt	99.2653	99.1250	99.4061	87.8458	10649	94	10544	63	57	90.4762
ltrigg-rtg1	INDEL	I1_5	HG002compoundhet	*	96.6675	94.0758	99.4060	64.7187	11624	732	11547	69	52	75.3623
rpoplin-dv42	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.3569	99.3083	99.4056	69.7301	2010	14	2007	12	5	41.6667
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.4697	91.8338	99.4055	29.1133	12640	1124	12707	76	75	98.6842
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3723	99.3395	99.4052	88.3238	1504	10	1504	9	9	100.0000
bgallagher-sentieon	SNP	tv	map_siren	*	99.5565	99.7083	99.4051	58.5993	45796	134	45788	274	36	13.1387
asubramanian-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	98.0447	96.7213	99.4048	55.2000	118	4	167	1	0	0.0000
jli-custom	INDEL	D6_15	HG002complexvar	homalt	99.7015	100.0000	99.4048	61.4173	1169	0	1169	7	7	100.0000
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	97.9472	96.5318	99.4048	65.3251	334	12	334	2	0	0.0000
cchapple-custom	INDEL	D1_5	map_l125_m1_e0	homalt	98.1098	96.8481	99.4048	82.6536	338	11	334	2	2	100.0000
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	63.1380	46.2604	99.4048	57.0332	167	194	167	1	1	100.0000
eyeh-varpipe	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	99.7015	100.0000	99.4048	74.4681	13	0	334	2	1	50.0000
rpoplin-dv42	SNP	ti	map_l100_m0_e0	*	99.1759	98.9481	99.4047	66.3363	21542	229	21539	129	85	65.8915
jli-custom	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1608	98.9184	99.4045	76.5307	6036	66	6009	36	20	55.5556
ltrigg-rtg2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	98.3352	97.2892	99.4041	71.1873	9044	252	9174	55	55	100.0000
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	88.3369	79.4872	99.4041	37.5744	775	200	834	5	5	100.0000
gduggal-bwaplat	SNP	ti	map_l100_m1_e0	*	83.2803	71.6572	99.4040	79.8206	34346	13585	34357	206	64	31.0680
hfeng-pmm3	SNP	ti	map_l125_m0_e0	*	99.3611	99.3183	99.4039	74.1190	12675	87	12673	76	11	14.4737
gduggal-snapfb	SNP	ti	func_cds	het	99.6775	99.9530	99.4036	28.0582	8500	4	8500	51	1	1.9608
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.3846	95.4459	99.4036	72.5886	503	24	500	3	3	100.0000
raldana-dualsentieon	SNP	ti	segdup	*	99.6041	99.8055	99.4035	89.2386	19499	38	19497	117	4	3.4188
gduggal-bwaplat	SNP	ti	map_l100_m2_e1	*	83.7577	72.3674	99.4034	80.9971	35811	13674	35822	215	67	31.1628
hfeng-pmm3	INDEL	D6_15	HG002complexvar	homalt	99.5730	99.7434	99.4032	61.3382	1166	3	1166	7	6	85.7143
hfeng-pmm1	INDEL	D6_15	HG002complexvar	homalt	99.5730	99.7434	99.4032	61.2103	1166	3	1166	7	7	100.0000
ckim-vqsr	SNP	*	map_siren	het	90.3081	82.7379	99.4031	73.7019	75284	15707	75273	452	26	5.7522
gduggal-bwaplat	SNP	*	map_l125_m1_e0	*	74.4387	59.4965	99.4030	86.9422	26968	18359	26975	162	46	28.3951
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	97.7974	96.2428	99.4030	77.3801	333	13	333	2	1	50.0000
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3532	99.3035	99.4030	66.0014	998	7	999	6	3	50.0000
jli-custom	INDEL	I16_PLUS	HG002complexvar	hetalt	95.8474	92.5373	99.4030	66.7988	310	25	333	2	2	100.0000
ckim-dragen	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.7905	98.1855	99.4030	70.9117	974	18	999	6	2	33.3333
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.0330	98.6660	99.4027	68.8043	1997	27	1997	12	2	16.6667
ndellapenna-hhga	INDEL	I6_15	HG002compoundhet	hetalt	95.3870	91.6833	99.4026	27.8852	7827	710	7820	47	42	89.3617
gduggal-bwaplat	INDEL	I1_5	map_l125_m1_e0	*	74.9249	60.1205	99.4024	93.7871	499	331	499	3	1	33.3333
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.4827	95.6357	99.4024	72.8208	504	23	499	3	3	100.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2355	99.0692	99.4023	51.3626	2661	25	2661	16	1	6.2500
hfeng-pmm2	INDEL	I6_15	*	het	98.7550	98.1162	99.4021	57.6463	9844	189	9809	59	39	66.1017
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6801	99.9599	99.4019	61.3678	2493	1	2493	15	0	0.0000
egarrison-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.5105	95.6899	99.4017	30.5702	3641	164	3655	22	22	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.1940	95.0822	99.4017	40.6176	6477	335	6480	39	39	100.0000
jpowers-varprowl	SNP	tv	map_l125_m2_e1	homalt	98.9247	98.4524	99.4016	73.5688	5980	94	5980	36	25	69.4444
gduggal-snapvard	SNP	ti	map_l250_m1_e0	homalt	96.4416	93.6528	99.4016	87.2532	1505	102	1495	9	7	77.7778
dgrover-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.7596	92.3754	99.4012	59.5152	315	26	332	2	2	100.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.0806	98.7622	99.4012	57.1167	1117	14	1162	7	7	100.0000
ltrigg-rtg2	INDEL	I6_15	segdup	*	98.5505	97.7143	99.4012	90.2624	171	4	166	1	1	100.0000
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.9169	92.6686	99.4012	55.4667	316	25	332	2	2	100.0000
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	87.9792	78.9116	99.4012	47.6489	1276	341	166	1	1	100.0000
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.5100	99.6190	99.4012	66.6667	523	2	498	3	0	0.0000

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