PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21101-21150 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | tv | map_l100_m0_e0 | homalt | 98.7169 | 98.0239 | 99.4198 | 69.7608 | 3770 | 76 | 3770 | 22 | 12 | 54.5455 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3237 | 99.2278 | 99.4197 | 79.1700 | 514 | 4 | 514 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | HG002complexvar | het | 98.8489 | 98.2847 | 99.4197 | 54.6026 | 17877 | 312 | 17818 | 104 | 33 | 31.7308 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.1709 | 93.1280 | 99.4195 | 32.5705 | 6681 | 493 | 6679 | 39 | 39 | 100.0000 | |
| jli-custom | SNP | ti | map_l125_m2_e0 | het | 99.1286 | 98.8398 | 99.4191 | 70.5575 | 18657 | 219 | 18655 | 109 | 33 | 30.2752 | |
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.4820 | 99.5452 | 99.4189 | 54.5520 | 55378 | 253 | 55428 | 324 | 26 | 8.0247 | |
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | het | 98.2879 | 97.1825 | 99.4189 | 73.8528 | 4277 | 124 | 4277 | 25 | 11 | 44.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.9098 | 92.6401 | 99.4187 | 25.8018 | 6646 | 528 | 6670 | 39 | 38 | 97.4359 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.4186 | 99.4186 | 99.4186 | 80.4989 | 171 | 1 | 171 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.4186 | 99.4186 | 99.4186 | 81.3651 | 171 | 1 | 171 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | segdup | * | 98.5591 | 97.7143 | 99.4186 | 92.8003 | 171 | 4 | 171 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5633 | 99.7085 | 99.4186 | 85.2740 | 342 | 1 | 342 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I6_15 | segdup | * | 98.5591 | 97.7143 | 99.4186 | 93.9373 | 171 | 4 | 171 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.5307 | 91.9355 | 99.4186 | 70.2936 | 171 | 15 | 171 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m1_e0 | het | 96.5285 | 93.8017 | 99.4186 | 74.9818 | 681 | 45 | 684 | 4 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 94.5133 | 90.0694 | 99.4185 | 29.9723 | 4281 | 472 | 4274 | 25 | 22 | 88.0000 | |
| egarrison-hhga | SNP | * | map_l250_m1_e0 | het | 98.2228 | 97.0557 | 99.4184 | 88.3044 | 4615 | 140 | 4615 | 27 | 10 | 37.0370 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 91.6939 | 85.0833 | 99.4182 | 67.5827 | 5972 | 1047 | 5981 | 35 | 13 | 37.1429 | |
| raldana-dualsentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.8272 | 96.2865 | 99.4180 | 65.5827 | 2904 | 112 | 2904 | 17 | 1 | 5.8824 | |
| gduggal-bwaplat | SNP | * | map_l150_m1_e0 | * | 68.1780 | 51.8769 | 99.4179 | 90.5327 | 15879 | 14730 | 15883 | 93 | 29 | 31.1828 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5466 | 99.6757 | 99.4179 | 77.8922 | 1537 | 5 | 1537 | 9 | 5 | 55.5556 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.6143 | 93.9646 | 99.4178 | 33.0736 | 4406 | 283 | 4440 | 26 | 5 | 19.2308 | |
| rpoplin-dv42 | SNP | * | map_l125_m1_e0 | * | 99.2363 | 99.0558 | 99.4176 | 68.8661 | 44899 | 428 | 44893 | 263 | 168 | 63.8783 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6756 | 99.9350 | 99.4176 | 34.7502 | 4613 | 3 | 4609 | 27 | 2 | 7.4074 | |
| gduggal-bwaplat | SNP | tv | map_l100_m2_e1 | * | 81.3480 | 68.8368 | 99.4174 | 84.4949 | 17404 | 7879 | 17405 | 102 | 20 | 19.6078 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6319 | 99.8474 | 99.4174 | 58.2620 | 3925 | 6 | 3925 | 23 | 2 | 8.6957 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5568 | 99.6967 | 99.4174 | 37.3360 | 4602 | 14 | 4607 | 27 | 8 | 29.6296 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6192 | 99.8219 | 99.4173 | 56.4253 | 3924 | 7 | 3924 | 23 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7078 | 100.0000 | 99.4172 | 52.2803 | 858 | 0 | 853 | 5 | 2 | 40.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.6285 | 99.8409 | 99.4171 | 72.8645 | 1883 | 3 | 1876 | 11 | 8 | 72.7273 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.8008 | 96.2364 | 99.4170 | 63.5191 | 5114 | 200 | 5116 | 30 | 22 | 73.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.4169 | 99.4169 | 99.4169 | 84.8965 | 341 | 2 | 341 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e0 | homalt | 97.6160 | 95.8791 | 99.4169 | 80.7412 | 349 | 15 | 341 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.7005 | 97.9943 | 99.4169 | 85.1515 | 342 | 7 | 341 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.8712 | 96.3728 | 99.4169 | 41.9419 | 8954 | 337 | 9036 | 53 | 52 | 98.1132 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.8712 | 96.3728 | 99.4169 | 41.9419 | 8954 | 337 | 9036 | 53 | 52 | 98.1132 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.6832 | 96.0089 | 99.4168 | 42.4933 | 19774 | 822 | 19775 | 116 | 110 | 94.8276 | |
| gduggal-snapfb | SNP | ti | map_l150_m0_e0 | homalt | 95.8935 | 92.6114 | 99.4168 | 85.4187 | 2557 | 204 | 2557 | 15 | 7 | 46.6667 | |
| hfeng-pmm3 | SNP | ti | map_l150_m1_e0 | het | 99.3161 | 99.2158 | 99.4166 | 75.5923 | 12273 | 97 | 12269 | 72 | 8 | 11.1111 | |
| ckim-gatk | SNP | * | * | hetalt | 98.6111 | 97.8186 | 99.4166 | 53.8999 | 852 | 19 | 852 | 5 | 4 | 80.0000 | |
| ckim-gatk | SNP | tv | * | hetalt | 98.6111 | 97.8186 | 99.4166 | 53.8999 | 852 | 19 | 852 | 5 | 4 | 80.0000 | |
| hfeng-pmm3 | SNP | tv | map_l125_m1_e0 | het | 99.3576 | 99.2988 | 99.4165 | 70.9308 | 10055 | 71 | 10053 | 59 | 5 | 8.4746 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e0 | * | 98.5254 | 97.6501 | 99.4164 | 81.4523 | 1870 | 45 | 1874 | 11 | 1 | 9.0909 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.4203 | 91.7332 | 99.4161 | 31.9693 | 12872 | 1160 | 12941 | 76 | 75 | 98.6842 | |
| ltrigg-rtg2 | SNP | tv | segdup | homalt | 99.6765 | 99.9382 | 99.4161 | 89.5171 | 3236 | 2 | 3235 | 19 | 19 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | segdup | homalt | 99.6765 | 99.9382 | 99.4161 | 89.9204 | 3236 | 2 | 3235 | 19 | 19 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.5808 | 93.9028 | 99.4161 | 29.0155 | 3573 | 232 | 4086 | 24 | 23 | 95.8333 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3837 | 99.3515 | 99.4160 | 78.0297 | 1532 | 10 | 1532 | 9 | 5 | 55.5556 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.6540 | 95.9541 | 99.4153 | 63.0411 | 5099 | 215 | 5101 | 30 | 22 | 73.3333 | |
| rpoplin-dv42 | INDEL | I6_15 | segdup | * | 98.2659 | 97.1429 | 99.4152 | 91.3984 | 170 | 5 | 170 | 1 | 1 | 100.0000 | |