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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 418 419 420 421 422 423 424 425 426 ... 1720 1721 » 21051-21100 / 86044 show all
hfeng-pmm1	INDEL	D1_5	map_l100_m2_e1	*	98.5438	97.6792	99.4238	81.5751	1894	45	1898	11	1	9.0909
dgrover-gatk	SNP	ti	map_l125_m2_e1	*	99.3781	99.3327	99.4236	73.9461	30365	204	30361	176	42	23.8636
dgrover-gatk	INDEL	D1_5	map_l125_m1_e0	homalt	99.1379	98.8539	99.4236	85.6730	345	4	345	2	2	100.0000
bgallagher-sentieon	INDEL	D1_5	segdup	het	99.4950	99.5665	99.4236	94.8997	689	3	690	4	0	0.0000
gduggal-bwafb	INDEL	D1_5	map_l125_m1_e0	homalt	99.1379	98.8539	99.4236	87.3818	345	4	345	2	2	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	87.6621	78.3888	99.4236	31.5582	1012	279	1035	6	5	83.3333
ckim-isaac	INDEL	*	*	homalt	96.2069	93.1918	99.4236	48.6128	116650	8522	116601	676	381	56.3609
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.1701	95.0166	99.4235	24.0070	5167	271	5174	30	29	96.6667
gduggal-bwaplat	INDEL	*	map_siren	homalt	83.1471	71.4501	99.4235	85.0984	1897	758	1897	11	10	90.9091
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	93.9195	88.9930	99.4234	30.1878	1520	188	1552	9	8	88.8889
dgrover-gatk	SNP	ti	map_l125_m1_e0	*	99.3758	99.3284	99.4233	72.4326	29138	197	29134	169	41	24.2604
jli-custom	INDEL	I1_5	map_l125_m2_e1	*	99.1939	98.9655	99.4233	85.7143	861	9	862	5	2	40.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.4720	97.5389	99.4231	74.9870	6262	158	6204	36	21	58.3333
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.4720	97.5389	99.4231	74.9870	6262	158	6204	36	21	58.3333
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.4629	99.5028	99.4231	53.9823	1601	8	1551	9	3	33.3333
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.8308	98.2456	99.4230	59.7380	4368	78	4308	25	16	64.0000
qzeng-custom	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.3109	99.1991	99.4230	66.8389	1734	14	1723	10	7	70.0000
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5374	99.6524	99.4226	63.8866	860	3	861	5	2	40.0000
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5374	99.6524	99.4226	64.3621	860	3	861	5	3	60.0000
jli-custom	SNP	tv	HG002compoundhet	het	99.4759	99.5292	99.4226	55.0428	4651	22	4649	27	10	37.0370
jmaeng-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5601	99.6979	99.4226	63.8015	35312	107	35301	205	16	7.8049
hfeng-pmm3	SNP	ti	map_l150_m2_e1	het	99.3308	99.2393	99.4225	76.8259	12916	99	12912	75	8	10.6667
gduggal-bwaplat	SNP	*	map_l150_m2_e1	*	69.5020	53.4244	99.4224	91.0196	17208	15002	17212	100	30	30.0000
gduggal-bwavard	SNP	*	map_l250_m2_e0	homalt	98.2454	97.0961	99.4222	88.0153	2608	78	2581	15	10	66.6667
jlack-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.2201	93.2179	99.4222	33.5409	6350	462	6367	37	31	83.7838
asubramanian-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.9428	98.4681	99.4221	74.5651	63444	987	63485	369	305	82.6558
bgallagher-sentieon	INDEL	I6_15	segdup	*	98.8506	98.2857	99.4220	92.6819	172	3	172	1	0	0.0000
asubramanian-gatk	INDEL	D1_5	map_l125_m2_e1	homalt	95.8217	92.4731	99.4220	87.0023	344	28	344	2	1	50.0000
ltrigg-rtg1	INDEL	I1_5	HG002complexvar	hetalt	97.3210	95.3071	99.4220	76.8604	1645	81	1892	11	11	100.0000
hfeng-pmm2	INDEL	D1_5	segdup	het	99.3497	99.2775	99.4220	94.7071	687	5	688	4	0	0.0000
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.2857	97.1751	99.4220	74.4838	172	5	172	1	1	100.0000
jlack-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	95.8217	92.4731	99.4220	70.1209	172	14	172	1	1	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	78.8827	65.3768	99.4220	27.6151	321	170	344	2	2	100.0000
cchapple-custom	INDEL	I1_5	map_l100_m2_e0	homalt	98.7651	98.1168	99.4220	80.4520	521	10	516	3	2	66.6667
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7101	100.0000	99.4220	81.3578	172	0	172	1	1	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7101	100.0000	99.4220	81.3578	172	0	172	1	1	100.0000
dgrover-gatk	SNP	ti	map_l125_m2_e0	*	99.3734	99.3258	99.4210	73.9134	30054	204	30050	175	42	24.0000
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	68.9886	52.8205	99.4208	56.5071	515	460	515	3	3	100.0000
ltrigg-rtg2	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0742	98.7301	99.4207	71.8442	47658	613	47540	277	83	29.9639
ckim-dragen	INDEL	I1_5	map_siren	homalt	99.2562	99.0924	99.4205	77.9401	1201	11	1201	7	5	71.4286
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.9300	96.4838	99.4203	88.6662	1372	50	1372	8	7	87.5000
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7093	100.0000	99.4203	57.0361	343	0	343	2	1	50.0000
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.2764	99.1329	99.4203	34.7086	1715	15	1715	10	10	100.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7093	100.0000	99.4203	57.3020	343	0	343	2	1	50.0000
raldana-dualsentieon	INDEL	D1_5	map_l125_m1_e0	homalt	98.8473	98.2808	99.4203	83.7952	343	6	343	2	2	100.0000
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	85.0062	74.2424	99.4203	29.8780	343	119	343	2	2	100.0000
jmaeng-gatk	INDEL	D1_5	map_l125_m1_e0	homalt	98.8473	98.2808	99.4203	85.4859	343	6	343	2	2	100.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7093	100.0000	99.4203	57.5646	343	0	343	2	1	50.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7093	100.0000	99.4203	56.2738	343	0	343	2	1	50.0000
hfeng-pmm1	SNP	tv	map_l150_m1_e0	het	99.0753	98.7331	99.4200	74.8128	6858	88	6856	40	10	25.0000

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