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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 417 418 419 420 421 422 423 424 425 ... 1720 1721 » 21001-21050 / 86044 show all
gduggal-bwafb	SNP	*	*	hetalt	99.5989	99.7704	99.4279	53.2620	869	2	869	5	5	100.0000
gduggal-bwafb	SNP	tv	*	hetalt	99.5989	99.7704	99.4279	53.2620	869	2	869	5	5	100.0000
ltrigg-rtg2	INDEL	I6_15	*	*	98.2993	97.1961	99.4278	44.2481	24127	696	23804	137	83	60.5839
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.4857	97.5614	99.4277	64.2143	17723	443	17720	102	87	85.2941
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.4857	97.5614	99.4277	64.2143	17723	443	17720	102	87	85.2941
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.0116	96.6355	99.4275	73.3333	517	18	521	3	3	100.0000
gduggal-bwaplat	INDEL	I1_5	map_l125_m2_e0	*	75.4526	60.7935	99.4275	94.2638	521	336	521	3	1	33.3333
gduggal-bwaplat	SNP	tv	map_l100_m1_e0	*	80.7967	68.0462	99.4275	83.4681	16672	7829	16673	96	19	19.7917
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5783	99.7296	99.4274	58.3882	2951	8	2952	17	2	11.7647
ckim-vqsr	SNP	tv	segdup	het	98.9929	98.5625	99.4272	95.9257	5211	76	5207	30	0	0.0000
gduggal-bwaplat	SNP	tv	map_l100_m2_e0	*	81.2147	68.6414	99.4272	84.5184	17183	7850	17184	99	19	19.1919
jli-custom	SNP	ti	map_l125_m1_e0	het	99.1158	98.8065	99.4270	68.8246	18048	218	18046	104	33	31.7308
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	94.6096	90.2375	99.4269	52.7740	342	37	347	2	2	100.0000
egarrison-hhga	INDEL	I1_5	HG002complexvar	het	98.9830	98.5431	99.4269	55.1160	17924	265	17869	103	26	25.2427
dgrover-gatk	INDEL	I16_PLUS	HG002complexvar	hetalt	97.8993	96.4179	99.4269	69.1424	323	12	347	2	2	100.0000
bgallagher-sentieon	INDEL	D1_5	map_l125_m1_e0	homalt	99.4269	99.4269	99.4269	85.2494	347	2	347	2	2	100.0000
astatham-gatk	INDEL	D1_5	map_l125_m1_e0	homalt	99.4269	99.4269	99.4269	85.3484	347	2	347	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l125_m1_e0	homalt	99.4269	99.4269	99.4269	83.7068	347	2	347	2	2	100.0000
hfeng-pmm1	INDEL	D6_15	HG002complexvar	*	97.1047	94.8887	99.4267	56.6618	5031	271	5029	29	25	86.2069
ltrigg-rtg1	INDEL	*	map_l100_m1_e0	homalt	99.0600	98.6960	99.4267	80.9576	1211	16	1214	7	4	57.1429
gduggal-bwaplat	SNP	ti	map_l250_m2_e0	het	59.6085	42.5630	99.4265	97.5359	1385	1869	1387	8	2	25.0000
ltrigg-rtg1	INDEL	D1_5	map_l125_m1_e0	*	97.4217	95.4963	99.4264	79.7601	1039	49	1040	6	2	33.3333
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6714	99.9177	99.4264	57.8940	6067	5	6067	35	34	97.1429
ndellapenna-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.2704	99.1149	99.4264	74.8452	5375	48	5373	31	27	87.0968
ndellapenna-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.2704	99.1149	99.4264	74.8452	5375	48	5373	31	27	87.0968
gduggal-bwafb	INDEL	D1_5	*	het	98.9590	98.4961	99.4263	56.5657	86257	1317	92550	534	170	31.8352
mlin-fermikit	SNP	tv	func_cds	*	99.2667	99.1078	99.4262	22.7208	4332	39	4332	25	14	56.0000
asubramanian-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1774	98.9300	99.4261	58.2999	17660	191	17671	102	10	9.8039
hfeng-pmm1	INDEL	I1_5	map_siren	homalt	99.6300	99.8350	99.4258	77.3924	1210	2	1212	7	4	57.1429
jli-custom	SNP	ti	map_l125_m2_e1	het	99.1383	98.8526	99.4256	70.6228	18868	219	18866	109	33	30.2752
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.2955	97.1910	99.4253	81.4499	173	5	173	1	1	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l125_m1_e0	homalt	99.4261	99.4269	99.4253	83.1477	347	2	346	2	2	100.0000
hfeng-pmm1	INDEL	I6_15	segdup	*	99.1404	98.8571	99.4253	92.0693	173	2	173	1	0	0.0000
jli-custom	INDEL	D1_5	map_l125_m1_e0	homalt	99.2826	99.1404	99.4253	84.3102	346	3	346	2	2	100.0000
astatham-gatk	INDEL	I16_PLUS	HG002complexvar	hetalt	97.7444	96.1194	99.4253	68.9563	322	13	346	2	2	100.0000
ckim-gatk	INDEL	D1_5	map_l125_m1_e0	homalt	99.2826	99.1404	99.4253	85.7785	346	3	346	2	2	100.0000
gduggal-snapplat	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	45.8495	29.7945	99.4253	32.5581	174	410	173	1	1	100.0000
egarrison-hhga	INDEL	D1_5	map_l125_m1_e0	homalt	99.2826	99.1404	99.4253	85.5781	346	3	346	2	2	100.0000
ckim-vqsr	INDEL	D1_5	map_l125_m1_e0	homalt	99.2826	99.1404	99.4253	85.7785	346	3	346	2	2	100.0000
gduggal-snapfb	SNP	*	HG002complexvar	homalt	99.5552	99.6857	99.4250	21.2913	287668	907	287733	1664	399	23.9784
ckim-dragen	SNP	ti	map_l250_m2_e0	homalt	99.1399	98.8565	99.4250	83.6036	1729	20	1729	10	9	90.0000
ckim-isaac	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	96.3802	93.5166	99.4246	60.9201	16429	1139	16588	96	15	15.6250
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.5493	93.8357	99.4245	23.8294	7596	499	7602	44	43	97.7273
hfeng-pmm3	SNP	ti	map_l150_m2_e0	het	99.3316	99.2392	99.4243	76.7413	12783	98	12779	74	8	10.8108
mlin-fermikit	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	98.3589	97.3161	99.4242	37.2504	6563	181	6562	38	5	13.1579
hfeng-pmm3	SNP	*	segdup	het	99.5790	99.7344	99.4241	89.8527	17271	46	17265	100	0	0.0000
ckim-isaac	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.9925	98.5647	99.4241	53.5139	14558	212	14501	84	48	57.1429
gduggal-bwaplat	SNP	tv	map_l125_m2_e1	*	74.1036	59.0623	99.4240	88.9166	9838	6819	9838	57	13	22.8070
cchapple-custom	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	het	98.5778	97.7459	99.4240	60.7000	477	11	2244	13	9	69.2308
gduggal-bwavard	SNP	ti	map_l250_m1_e0	homalt	98.2992	97.1998	99.4238	87.2438	1562	45	1553	9	6	66.6667

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