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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
20901-20950 / 86044 show all
ckim-isaacSNP*map_l250_m0_e0*
66.1457
49.5550
99.4361
93.9169
10581077105862
33.3333
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
97.2690
95.1945
99.4359
31.3606
124863123474
57.1429
jli-customSNPtvmap_l125_m1_e0*
99.2462
99.0572
99.4359
66.9313
15865151158649026
28.8889
gduggal-bwaplatSNPtimap_l250_m2_e1het
59.7244
42.6796
99.4358
97.5469
14081891141082
25.0000
hfeng-pmm3SNPtvmap_l150_m2_e0*
99.3876
99.3395
99.4357
75.5855
112807511278649
14.0625
bgallagher-sentieonINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.2241
87.7430
99.4356
30.6136
207629021141211
91.6667
hfeng-pmm1INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5198
99.6042
99.4355
71.4918
35231435232020
100.0000
ckim-vqsrINDEL*map_sirenhomalt
99.3599
99.2844
99.4355
81.7137
2636192642158
53.3333
gduggal-snapfbSNP*func_cds*
99.6978
99.9614
99.4355
28.3431
181437181431032
1.9418
gduggal-bwavardSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
98.8586
98.2884
99.4354
55.5329
16883294167309559
62.1053
eyeh-varpipeSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7046
99.9754
99.4352
43.5229
406414049235
21.7391
gduggal-snapplatSNPtifunc_cdshet
99.3942
99.3532
99.4351
33.3621
8449558449484
8.3333
hfeng-pmm1INDELD1_5map_l250_m2_e1*
97.2376
95.1351
99.4350
94.2157
176917610
0.0000
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_quadTR_51to200het
96.6549
94.0260
99.4350
76.0811
3622335221
50.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.8070
98.1869
99.4350
56.0248
7041370443
75.0000
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
78.7591
65.2015
99.4350
82.5616
35619035221
50.0000
ckim-isaacINDELI1_5func_cds*
98.5994
97.7778
99.4350
29.7619
176417610
0.0000
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.0141
98.5968
99.4350
71.9122
2108302112122
16.6667
rpoplin-dv42SNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
99.3525
99.2706
99.4347
70.0110
2994222990176
35.2941
cchapple-customINDEL***
99.1388
98.8448
99.4346
57.2260
340562398036352020671592
77.0198
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.3409
99.2474
99.4345
80.6493
10558105566
100.0000
ckim-isaacSNPtimap_l250_m1_e0*
66.4534
49.9017
99.4343
90.2759
228522942285132
15.3846
dgrover-gatkINDELI1_5map_siren*
99.2843
99.1348
99.4343
81.3909
2979262988175
29.4118
asubramanian-gatkSNPtimap_l250_m2_e0het
35.4961
21.6042
99.4342
98.4524
703255170341
25.0000
hfeng-pmm3SNPtvmap_l125_m2_e0het
99.3771
99.3201
99.4342
72.2814
103717110369595
8.4746
raldana-dualsentieonINDELI1_5map_l100_m2_e0homalt
99.3402
99.2467
99.4340
80.8110
527452732
66.6667
ndellapenna-hhgaSNP*segduphet
99.4196
99.4052
99.4339
89.3885
1721410317214984
4.0816
asubramanian-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.1453
98.8584
99.4339
36.2670
6668776675380
0.0000
hfeng-pmm3INDELD1_5map_siren*
99.3769
99.3199
99.4339
78.1455
3505243513205
25.0000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6597
99.8868
99.4337
56.4666
617776145352
5.7143
gduggal-bwaplatSNP*map_l250_m2_e0het
57.5846
40.5275
99.4337
97.7208
210530892107123
25.0000
hfeng-pmm1SNPtimap_l125_m0_e0*
99.2424
99.0519
99.4336
73.9101
12641121126397220
27.7778
ckim-isaacINDELI6_15HG002compoundhethetalt
82.1207
69.9426
99.4336
21.1377
5971256659693423
67.6471
astatham-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.1904
98.9484
99.4336
67.7810
38584138622216
72.7273
hfeng-pmm2INDELI1_5map_siren*
99.2171
99.0017
99.4335
80.3741
2975302984174
23.5294
hfeng-pmm1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
93.6000
88.4131
99.4334
87.7068
7029270244
100.0000
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.0826
98.7342
99.4334
88.6605
140418140487
87.5000
jli-customSNP*map_l100_m2_e1het
99.2878
99.1428
99.4333
64.8837
464964024649326562
23.3962
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.3248
99.2165
99.4333
71.0574
16842133168459685
88.5417
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.3248
99.2165
99.4333
71.0574
16842133168459685
88.5417
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.7841
96.1888
99.4332
49.3970
2140284821403122112
91.8033
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.3148
95.2850
99.4329
24.6012
454722545592626
100.0000
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5015
99.5702
99.4329
75.1639
50972250852911
37.9310
ckim-dragenINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.1772
98.9228
99.4328
67.8997
38574238572216
72.7273
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.1954
96.9884
99.4328
50.3319
35490110235413202180
89.1089
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5329
99.6333
99.4326
76.3741
2989112979172
11.7647
ltrigg-rtg1INDELI16_PLUS*het
92.1773
85.9088
99.4326
48.0027
23353832278135
38.4615
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.3603
99.2881
99.4326
81.7523
68344968343915
38.4615
ckim-isaacSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
95.9870
92.7725
99.4322
50.3135
1566122157694
44.4444
ckim-dragenSNPtimap_l250_m2_e1homalt
99.1226
98.8149
99.4321
83.6687
1751211751109
90.0000