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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
20851-20900 / 86044 show all
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9367
98.4377
99.4408
75.9589
449887144498825334
13.4387
hfeng-pmm2SNPtimap_l250_m1_e0homalt
99.5025
99.5644
99.4406
86.8749
16007160092
22.2222
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
90.8046
83.5488
99.4406
88.0415
71114071140
0.0000
hfeng-pmm3SNPtimap_l250_m1_e0homalt
99.5025
99.5644
99.4406
86.8266
16007160092
22.2222
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.3017
99.1632
99.4406
55.8914
711671143
75.0000
ltrigg-rtg1SNP*func_cds*
99.6647
99.8898
99.4405
22.8252
1813020181291021
0.9804
egarrison-hhgaSNP*segduphet
99.4921
99.5438
99.4404
89.6178
172387917238974
4.1237
jli-customINDELI1_5segduphet
99.3483
99.2565
99.4403
94.7265
534453330
0.0000
hfeng-pmm1SNPtimap_l250_m1_e0homalt
99.4712
99.5022
99.4403
86.8852
15998159992
22.2222
hfeng-pmm3SNPtvmap_l125_m2_e1het
99.3837
99.3272
99.4402
72.3386
104827110480595
8.4746
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.6261
99.8129
99.4400
42.7465
213442131122
16.6667
mlin-fermikitINDELD16_PLUSHG002complexvarhetalt
85.1780
74.4939
99.4398
52.4000
1846335522
100.0000
ckim-dragenINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.5871
95.8024
99.4396
50.7631
568324956783230
93.7500
ckim-isaacSNPtvmap_l250_m2_e0*
60.1307
43.0951
99.4396
91.3095
12421640124271
14.2857
gduggal-bwaplatINDELI1_5map_l125_m2_e1*
75.7295
61.1494
99.4393
94.2939
53233853231
33.3333
cchapple-customSNP*func_cdshet
99.6697
99.9014
99.4391
30.1424
111501111168631
1.5873
qzeng-customINDELD1_5*homalt
99.2131
98.9883
99.4390
53.3870
4843149548391273239
87.5458
hfeng-pmm2SNP*map_l150_m0_e0homalt
99.5726
99.7065
99.4390
76.7349
4077124077238
34.7826
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.5306
97.6388
99.4388
47.4185
3572886435971203125
61.5764
bgallagher-sentieonSNPtvfunc_cdshet
99.7184
100.0000
99.4384
31.4601
265702656150
0.0000
anovak-vgSNP**homalt
99.1091
98.7819
99.4384
16.6644
116578714375115843965435522
84.3955
cchapple-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.3332
97.2524
99.4383
69.4992
15149428152268678
90.6977
cchapple-customINDELI6_15segdup*
99.1468
98.8571
99.4382
92.6110
173217710
0.0000
jli-customINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200*
96.4034
93.5484
99.4382
67.4589
1741217711
100.0000
ckim-gatkINDELD1_5*het
99.6268
99.8162
99.4381
60.7761
8741316187419494126
25.5061
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.3283
99.2191
99.4377
37.1644
18041142180381022
1.9608
jlack-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
89.0334
80.6002
99.4376
31.3443
190745919451110
90.9091
ckim-dragenINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2418
99.0470
99.4374
74.2668
6381761463806361326
90.3047
gduggal-bwaplatSNPtvmap_l150_m0_e0*
55.0840
38.0930
99.4371
95.3509
15902584159094
44.4444
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
55.1982
38.2022
99.4371
43.8652
3196517031801816
88.8889
astatham-gatkSNP*map_l150_m0_e0*
93.4108
88.0735
99.4368
82.7630
105971435105946021
35.0000
astatham-gatkSNPtvmap_l125_m0_e0*
93.2991
87.8751
99.4368
79.1316
58278045826339
27.2727
egarrison-hhgaSNP*map_l250_m2_e1het
98.3289
97.2454
99.4367
88.6583
511914551192911
37.9310
jpowers-varprowlSNPtvmap_sirenhomalt
99.3790
99.3213
99.4367
59.4375
17123117171239772
74.2268
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.6517
95.9297
99.4366
32.4551
688229268833939
100.0000
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.3503
99.2642
99.4366
68.8610
1146785114726558
89.2308
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.3503
99.2642
99.4366
68.8610
1146785114726558
89.2308
eyeh-varpipeINDELD1_5segduphet
99.2846
99.1329
99.4366
93.3025
686670640
0.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.3666
99.2968
99.4366
88.7015
141210141287
87.5000
qzeng-customSNPtvfunc_cdshet
99.5488
99.6613
99.4365
40.8444
264892647150
0.0000
rpoplin-dv42SNP*map_l125_m2_e1*
99.2571
99.0784
99.4365
70.8435
4676743546761265170
64.1509
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.1570
98.8791
99.4364
71.0422
123514123574
57.1429
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.1570
98.8791
99.4364
71.0422
123514123574
57.1429
ckim-dragenSNPtimap_l250_m1_e0homalt
99.1261
98.8177
99.4364
82.0944
158819158898
88.8889
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.5475
95.7291
99.4363
77.3949
40571814057233
13.0435
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.9739
92.7447
99.4362
52.4133
154931212158729088
97.7778
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.9739
92.7447
99.4362
52.4133
154931212158729088
97.7778
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.3312
99.2264
99.4362
88.4220
141111141187
87.5000
qzeng-customSNPtimap_l100_m2_e0homalt
87.9965
78.9175
99.4361
59.4553
144493860142848175
92.5926
gduggal-bwaplatSNPtvmap_l125_m2_e0*
73.9169
58.8210
99.4361
88.9350
9699679096995513
23.6364