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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
20801-20850 / 86044 show all
dgrover-gatkINDELD1_5segduphomalt
99.7222
100.0000
99.4460
94.5665
359035922
100.0000
jmaeng-gatkINDELD1_5segduphomalt
99.7222
100.0000
99.4460
94.5203
359035922
100.0000
jli-customSNPtimap_l150_m0_e0*
98.8029
98.1682
99.4459
75.0426
771714477174319
44.1860
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.5998
99.7544
99.4458
51.6487
1015325105875958
98.3051
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.1021
96.7944
99.4457
64.3875
13316441132757459
79.7297
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.1021
96.7944
99.4457
64.3875
13316441132757459
79.7297
ghariani-varprowlSNPtvmap_l100_m0_e0homalt
98.6901
97.9459
99.4456
67.1380
37677937672111
52.3810
jli-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.7103
96.0354
99.4447
23.8949
661327366263736
97.2973
astatham-gatkINDEL***
99.3424
99.2404
99.4446
59.9126
341925261734178819091550
81.1943
hfeng-pmm1SNPtvmap_l150_m2_e0het
99.1075
98.7728
99.4445
75.8631
71638971614010
25.0000
jlack-gatkINDELD1_5segduphomalt
99.5828
99.7214
99.4444
94.1766
358135822
100.0000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.1959
89.4737
99.4444
63.3401
3404035821
50.0000
ckim-isaacSNP*map_l250_m2_e0*
64.4492
47.6728
99.4444
90.9774
375941263759214
19.0476
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.8505
98.2637
99.4444
73.4266
14318253143188015
18.7500
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.8505
98.2637
99.4444
73.4266
14318253143188015
18.7500
ndellapenna-hhgaINDELD1_5segduphomalt
99.5828
99.7214
99.4444
94.2939
358135822
100.0000
raldana-dualsentieonINDELD1_5map_l125_m2_e0homalt
98.8950
98.3516
99.4444
84.6743
358635822
100.0000
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.3065
99.1690
99.4444
61.2487
358335821
50.0000
jmaeng-gatkINDELD1_5map_l125_m2_e0homalt
98.8950
98.3516
99.4444
86.2385
358635822
100.0000
jmaeng-gatkINDELI1_5**
99.2409
99.0383
99.4444
59.6817
1492151449149263834391
46.8825
jli-customINDELD6_15*hetalt
97.5456
95.7181
99.4442
33.1475
782435078724442
95.4545
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.2560
99.0686
99.4441
78.7870
65956266193715
40.5405
bgallagher-sentieonSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.2753
99.1071
99.4439
65.2571
3219293219184
22.2222
gduggal-bwaplatSNP*map_l250_m2_e1het
57.7898
40.7295
99.4439
97.7262
214431202146123
25.0000
ckim-isaacSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.5412
91.9336
99.4434
50.8361
1607141160897
77.7778
raldana-dualsentieonINDELI1_5map_l100_m2_e1homalt
99.3513
99.2593
99.4434
80.9339
536453632
66.6667
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.8130
98.1907
99.4431
58.6332
37997037502116
76.1905
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
98.8678
98.2992
99.4430
40.4688
10230177101775724
42.1053
ltrigg-rtg2INDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.3714
93.4840
99.4429
53.4069
7034971444
100.0000
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.3046
99.1667
99.4429
87.9933
714671443
75.0000
hfeng-pmm3SNPtvmap_l150_m2_e1*
99.3954
99.3479
99.4429
75.5927
114277511425649
14.0625
cchapple-customINDELD1_5map_l125_m2_e1homalt
98.2283
97.0430
99.4429
83.5246
3611135722
100.0000
asubramanian-gatkSNPtimap_l250_m2_e1het
35.5489
21.6429
99.4429
98.4616
714258571441
25.0000
asubramanian-gatkSNPtvmap_l250_m2_e0het
31.0570
18.4021
99.4429
98.7043
357158335720
0.0000
qzeng-customSNPtimap_l100_m2_e1homalt
88.0999
79.0797
99.4428
59.4081
146253869144578175
92.5926
qzeng-customINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
98.7953
98.1565
99.4425
52.2443
2609492532914236
25.3521
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
97.5723
95.7711
99.4425
60.5281
23101022319138
61.5385
hfeng-pmm3SNP*map_l100_m0_e0het
99.3509
99.2596
99.4424
70.0348
210481572104411811
9.3220
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.3719
99.3026
99.4413
55.9656
712571243
75.0000
ltrigg-rtg1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.1659
98.8920
99.4413
56.2882
357435622
100.0000
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_quadTR_51to200*
95.8307
92.4731
99.4413
69.4539
1721417810
0.0000
ltrigg-rtg1INDEL*map_l100_m2_e0homalt
99.0050
98.5726
99.4413
82.1306
124318124674
57.1429
ltrigg-rtg2INDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.6386
95.9000
99.4413
58.6605
341514633821914
73.6842
qzeng-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
93.8071
88.7770
99.4413
46.0843
238130189054
80.0000
gduggal-bwafbINDELI1_5map_l125_m0_e0het
95.9569
92.7083
99.4413
88.6493
1781417810
0.0000
cchapple-customINDELI1_5func_cds*
99.4429
99.4444
99.4413
30.0781
179117810
0.0000
ckim-dragenINDELD1_5map_l125_m2_e0homalt
98.7544
98.0769
99.4413
85.9828
357735622
100.0000
bgallagher-sentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2748
99.1091
99.4411
74.0482
6385757463870359327
91.0864
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.6664
95.9541
99.4410
50.6296
569224056923230
93.7500
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.9367
98.4377
99.4408
75.9589
449887144498825334
13.4387