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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 411 412 413 414 415 416 417 418 419 ... 1720 1721 » 20701-20750 / 86044 show all
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	81.9280	69.6538	99.4536	27.2366	342	149	364	2	2	100.0000
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.2111	91.3158	99.4536	61.2288	347	33	364	2	2	100.0000
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	97.5125	95.6457	99.4536	45.9819	13421	611	13651	75	74	98.6667
ckim-dragen	INDEL	D1_5	map_l125_m2_e1	homalt	98.7814	98.1183	99.4536	85.9716	365	7	364	2	2	100.0000
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.9242	90.7895	99.4536	60.9392	345	35	364	2	2	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.9242	90.7895	99.4536	60.9392	345	35	364	2	2	100.0000
eyeh-varpipe	SNP	*	map_l125_m1_e0	hetalt	99.7260	100.0000	99.4536	69.3980	30	0	182	1	0	0.0000
egarrison-hhga	INDEL	I6_15	HG002compoundhet	hetalt	95.3278	91.5310	99.4533	27.1869	7814	723	7823	43	37	86.0465
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5997	99.7468	99.4531	47.3533	2364	6	2364	13	13	100.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.3117	97.1963	99.4531	73.3782	6240	180	6183	34	24	70.5882
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.3117	97.1963	99.4531	73.3782	6240	180	6183	34	24	70.5882
asubramanian-gatk	INDEL	*	HG002complexvar	homalt	99.4823	99.5116	99.4530	57.3903	26895	132	26910	148	101	68.2432
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.4015	97.3724	99.4527	70.1934	1297	35	1272	7	5	71.4286
ckim-isaac	SNP	*	map_l250_m2_e1	*	64.5467	47.7776	99.4527	91.0189	3816	4171	3816	21	4	19.0476
hfeng-pmm1	SNP	*	map_l150_m1_e0	het	99.0880	98.7264	99.4522	74.8794	19070	246	19064	105	27	25.7143
jli-custom	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	96.4143	93.5567	99.4521	72.2433	363	25	363	2	1	50.0000
jli-custom	SNP	tv	map_l125_m2_e0	*	99.2648	99.0782	99.4521	69.0688	16337	152	16336	90	26	28.8889
ckim-isaac	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	91.5095	84.7418	99.4521	75.3295	722	130	726	4	4	100.0000
dgrover-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.2427	99.0344	99.4519	67.0189	4718	46	4718	26	9	34.6154
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6469	99.8428	99.4518	52.6335	2540	4	2540	14	2	14.2857
hfeng-pmm1	SNP	tv	map_l150_m2_e1	het	99.1123	98.7752	99.4518	75.8770	7258	90	7256	40	10	25.0000
gduggal-snapplat	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	96.5046	93.7269	99.4518	53.6591	3810	255	3810	21	4	19.0476
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6469	99.8428	99.4518	50.2823	2540	4	2540	14	0	0.0000
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.0497	94.7611	99.4516	24.8186	4522	250	4534	25	25	100.0000
ltrigg-rtg1	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.9259	94.5255	99.4514	70.4506	14573	844	15046	83	82	98.7952
ndellapenna-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.1506	94.9540	99.4513	30.8218	3613	192	3625	20	19	95.0000
asubramanian-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.9885	94.6447	99.4513	62.5582	5620	318	6163	34	32	94.1176
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.6672	99.8841	99.4512	37.3053	3446	4	3443	19	2	10.5263
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2061	98.9623	99.4512	52.1534	1812	19	1812	10	1	10.0000
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.8949	94.4670	99.4508	25.3587	6505	381	6519	36	36	100.0000
astatham-gatk	INDEL	D1_5	map_l125_m2_e0	homalt	99.4505	99.4505	99.4505	86.1280	362	2	362	2	2	100.0000
bgallagher-sentieon	INDEL	D1_5	map_l125_m2_e0	homalt	99.4505	99.4505	99.4505	86.0108	362	2	362	2	2	100.0000
gduggal-snapvard	SNP	ti	map_l250_m2_e0	homalt	96.5862	93.8822	99.4505	88.0158	1642	107	1629	9	7	77.7778
hfeng-pmm3	INDEL	D6_15	segdup	*	97.0509	94.7644	99.4505	92.8823	181	10	181	1	1	100.0000
hfeng-pmm2	INDEL	D1_5	map_l125_m2_e0	homalt	99.4505	99.4505	99.4505	84.6219	362	2	362	2	2	100.0000
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	93.8234	88.7991	99.4503	37.7718	2418	305	2533	14	13	92.8571
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4893	99.5283	99.4503	51.6973	2532	12	2533	14	1	7.1429
cchapple-custom	SNP	tv	HG002compoundhet	*	99.1131	98.7784	99.4501	47.4326	8814	109	9224	51	34	66.6667
ltrigg-rtg1	INDEL	*	map_l100_m2_e1	homalt	99.0206	98.5948	99.4501	82.2479	1263	18	1266	7	4	57.1429
ltrigg-rtg1	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.9814	98.5171	99.4501	63.2766	5514	83	5426	30	9	30.0000
jli-custom	INDEL	*	segdup	het	99.1785	98.9086	99.4498	94.3865	1450	16	1446	8	1	12.5000
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.3235	99.1976	99.4496	87.1665	2349	19	2349	13	13	100.0000
ckim-gatk	INDEL	I1_5	*	het	99.5633	99.6774	99.4495	61.8943	78786	255	78766	436	147	33.7156
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5635	99.6780	99.4493	63.4150	2167	7	2167	12	0	0.0000
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.5549	95.7315	99.4491	28.9744	7715	344	7762	43	41	95.3488
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.5549	95.7315	99.4491	28.9744	7715	344	7762	43	41	95.3488
jli-custom	INDEL	D1_5	map_l125_m2_e0	homalt	99.3122	99.1758	99.4490	85.1837	361	3	361	2	2	100.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7238	100.0000	99.4490	62.9592	361	0	361	2	1	50.0000
ckim-gatk	INDEL	D1_5	map_l125_m2_e0	homalt	99.3122	99.1758	99.4490	86.4855	361	3	361	2	2	100.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7238	100.0000	99.4490	63.1098	361	0	361	2	1	50.0000

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