PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
20651-20700 / 86044 show all
hfeng-pmm2SNPtvmap_sirenhet
99.5196
99.5806
99.4588
60.5491
284891202848415514
9.0323
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.6948
94.0803
99.4587
42.1375
874155088204847
97.9167
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.6948
94.0803
99.4587
42.1375
874155088204847
97.9167
gduggal-bwaplatINDELD1_5HG002compoundhethetalt
84.6945
73.7471
99.4587
70.0372
7534268275334139
95.1220
jlack-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
95.3650
91.5952
99.4585
65.4829
5344955132
66.6667
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3913
99.3241
99.4585
49.1657
2939202939163
18.7500
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6744
99.8915
99.4583
77.8018
921191852
40.0000
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.3045
99.1512
99.4582
87.3902
128511128576
85.7143
dgrover-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.9517
89.0231
99.4582
32.2317
1622200165298
88.8889
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.3045
99.1512
99.4582
87.3902
128511128576
85.7143
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.1863
98.9160
99.4580
80.5789
365436722
100.0000
gduggal-bwafbINDELD1_5map_l125_m2_e1homalt
99.0553
98.6559
99.4580
88.0078
367536722
100.0000
rpoplin-dv42INDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
89.1786
80.8250
99.4580
43.1871
72517273444
100.0000
bgallagher-sentieonINDELD1_5segdup*
99.5476
99.6374
99.4580
94.7935
10994110162
33.3333
ltrigg-rtg1INDELI6_15*het
98.5293
97.6179
99.4579
45.4535
979423995405214
26.9231
hfeng-pmm1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.9000
98.3483
99.4578
70.4170
131022128474
57.1429
jlack-gatkINDELD1_5*hetalt
95.0041
90.9322
99.4577
62.5612
931692993545146
90.1961
jli-customSNPtvmap_l125_m2_e1*
99.2722
99.0875
99.4576
69.1406
16505152165049026
28.8889
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
88.0582
79.0032
99.4576
57.3453
1490396146787
87.5000
gduggal-snapvardSNPtimap_l250_m2_e1homalt
96.5718
93.8488
99.4575
88.0802
1663109165097
77.7778
cchapple-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
98.9656
98.4786
99.4574
53.6403
10939169157638667
77.9070
cchapple-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
98.9964
98.5399
99.4571
53.2701
1957229021802119100
84.0336
gduggal-bwavardSNPti*het
99.2556
99.0550
99.4571
24.6552
126978312114126578969102002
28.9725
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.5020
99.5471
99.4570
86.4067
10995109965
83.3333
jli-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
95.2234
91.3356
99.4570
29.5056
216120521981211
91.6667
hfeng-pmm1INDELD1_5segdup*
99.4565
99.4560
99.4570
94.0511
10976109960
0.0000
ckim-gatkSNP*func_cds*
99.6618
99.8678
99.4567
31.5863
181262418123991
1.0101
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.2125
91.3158
99.4565
63.2368
3473336622
100.0000
cchapple-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4894
99.5224
99.4565
52.2754
60432960393333
100.0000
asubramanian-gatkSNPtvmap_l250_m2_e1het
31.3759
18.6260
99.4565
98.6990
366159936620
0.0000
astatham-gatkSNPtvmap_l250_m2_e0homalt
98.5460
97.6521
99.4565
86.4046
9152291554
80.0000
gduggal-bwaplatINDELI1_5map_l150_m2_e0het
74.2394
59.2233
99.4565
96.5348
18312618310
0.0000
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
63.1067
46.2156
99.4565
35.5517
40346936622
100.0000
ltrigg-rtg2INDELD1_5map_l125_m2_e1homalt
98.6464
97.8495
99.4565
80.1510
364836621
50.0000
jmaeng-gatkINDELD1_5map_l125_m2_e1homalt
98.9189
98.3871
99.4565
86.2224
366636622
100.0000
mlin-fermikitINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
86.3984
76.3713
99.4565
26.6932
1815618311
100.0000
raldana-dualsentieonINDELD1_5map_l125_m2_e1homalt
98.9189
98.3871
99.4565
84.6603
366636622
100.0000
gduggal-bwafbINDELD1_5HG002complexvarhet
98.1510
96.8794
99.4564
54.4051
201176482085611444
38.5965
dgrover-gatkINDEL***
99.4009
99.3458
99.4561
60.2776
342288225434215418711513
80.8658
jpowers-varprowlSNP***
99.5004
99.5447
99.4561
23.3348
3040706139083041157166322670
16.0534
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.7272
100.0000
99.4559
70.7045
914091450
0.0000
ckim-isaacSNPtimap_l250_m2_e1*
66.8585
50.3546
99.4553
90.8557
255625202556143
21.4286
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.3823
95.3945
99.4547
79.4362
65663176566369
25.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
95.7409
92.2945
99.4545
25.2717
5394554733
100.0000
gduggal-bwafbINDELD1_5segdup*
99.0456
98.6401
99.4545
94.8352
108815109461
16.6667
ltrigg-rtg1INDELD1_5map_l125_m2_e0*
97.5025
95.6255
99.4545
80.9590
109350109462
33.3333
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.4673
97.4995
99.4544
67.8523
15675402156768670
81.3953
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.4673
97.4995
99.4544
67.8523
15675402156768670
81.3953
ghariani-varprowlSNPtvmap_l250_m2_e1homalt
97.8518
96.3002
99.4541
89.6696
9113591151
20.0000
ltrigg-rtg1INDELD1_5map_l150_m0_e0het
93.9975
89.1089
99.4536
79.7790
1802218210
0.0000