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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 409 410 411 412 413 414 415 416 417 ... 1720 1721 » 20601-20650 / 86044 show all
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	81.3513	68.8197	99.4627	55.6845	1481	671	1481	8	5	62.5000
gduggal-bwavard	SNP	tv	*	*	99.2324	99.0032	99.4627	26.1679	960032	9666	955309	5161	1540	29.8392
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.0664	92.8947	99.4624	64.1618	353	27	370	2	2	100.0000
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.0664	92.8947	99.4624	64.1618	353	27	370	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l125_m2_e1	homalt	99.4624	99.4624	99.4624	84.6217	370	2	370	2	2	100.0000
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	95.0808	91.0689	99.4624	87.4506	1295	127	1295	7	3	42.8571
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	82.9090	71.0794	99.4624	29.2776	349	142	370	2	2	100.0000
astatham-gatk	INDEL	D1_5	map_l125_m2_e1	homalt	99.4624	99.4624	99.4624	86.1090	370	2	370	2	2	100.0000
bgallagher-sentieon	INDEL	D1_5	map_l125_m2_e1	homalt	99.4624	99.4624	99.4624	86.0098	370	2	370	2	2	100.0000
mlin-fermikit	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	87.7721	78.5408	99.4624	73.8764	183	50	185	1	1	100.0000
gduggal-snapvard	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.3473	97.2572	99.4621	37.7380	6560	185	6472	35	18	51.4286
astatham-gatk	SNP	tv	map_l250_m2_e1	homalt	98.5600	97.6744	99.4618	86.4833	924	22	924	5	4	80.0000
egarrison-hhga	SNP	tv	segdup	*	99.5315	99.6015	99.4616	90.4428	8498	34	8498	46	15	32.6087
rpoplin-dv42	INDEL	I6_15	*	hetalt	94.8036	90.5625	99.4614	37.3252	7744	807	7756	42	40	95.2381
ltrigg-rtg2	SNP	tv	HG002compoundhet	het	99.1949	98.9300	99.4612	50.0484	4623	50	4615	25	5	20.0000
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	98.9784	98.5004	99.4611	39.0941	24172	368	24179	131	123	93.8931
anovak-vg	SNP	ti	map_l250_m2_e0	homalt	85.1522	74.4425	99.4611	88.0122	1302	447	1292	7	5	71.4286
jli-custom	INDEL	D1_5	map_l125_m2_e1	homalt	99.3271	99.1935	99.4609	85.1719	369	3	369	2	2	100.0000
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.7836	92.3684	99.4609	59.6300	351	29	369	2	2	100.0000
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5812	99.7018	99.4609	42.3318	10700	32	10700	58	2	3.4483
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.8154	96.2235	99.4609	53.5902	1860	73	1845	10	10	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	82.7698	70.8758	99.4609	27.5391	348	143	369	2	2	100.0000
ckim-vqsr	INDEL	D1_5	map_l125_m2_e1	homalt	99.3271	99.1935	99.4609	86.4599	369	3	369	2	2	100.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	98.0909	96.7581	99.4609	78.0343	388	13	369	2	2	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	82.7698	70.8758	99.4609	27.5391	348	143	369	2	2	100.0000
ckim-gatk	INDEL	D1_5	map_l125_m2_e1	homalt	99.3271	99.1935	99.4609	86.4599	369	3	369	2	2	100.0000
jli-custom	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	98.3153	97.1961	99.4606	33.3866	6621	191	6638	36	35	97.2222
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7296	100.0000	99.4606	78.2343	922	0	922	5	3	60.0000
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	98.8844	98.3152	99.4603	36.9967	4610	79	4607	25	0	0.0000
hfeng-pmm2	SNP	tv	map_l125_m0_e0	homalt	99.5050	99.5498	99.4602	72.5691	2211	10	2211	12	4	33.3333
hfeng-pmm1	SNP	tv	map_l125_m0_e0	homalt	99.5050	99.5498	99.4602	72.4501	2211	10	2211	12	4	33.3333
egarrison-hhga	SNP	tv	map_l250_m1_e0	*	98.4351	97.4311	99.4601	86.8596	2579	68	2579	14	7	50.0000
jli-custom	SNP	*	map_l150_m2_e0	*	99.1640	98.8698	99.4599	73.1036	31492	360	31489	171	59	34.5029
qzeng-custom	INDEL	I6_15	HG002compoundhet	hetalt	81.2263	68.6424	99.4598	26.8379	5860	2677	3682	20	14	70.0000
hfeng-pmm3	SNP	tv	map_l125_m0_e0	homalt	99.4597	99.4597	99.4597	72.3171	2209	12	2209	12	4	33.3333
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.0379	96.6562	99.4597	63.5583	13297	460	13254	72	47	65.2778
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.0379	96.6562	99.4597	63.5583	13297	460	13254	72	47	65.2778
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.2575	99.0562	99.4596	77.8403	4198	40	4233	23	9	39.1304
astatham-gatk	SNP	tv	map_l150_m1_e0	het	86.7142	76.8644	99.4596	83.0624	5339	1607	5337	29	8	27.5862
raldana-dualsentieon	INDEL	D1_5	map_siren	*	99.1622	98.8665	99.4596	79.2799	3489	40	3497	19	5	26.3158
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.7077	96.0166	99.4595	54.9659	1856	77	1840	10	10	100.0000
gduggal-bwaplat	SNP	tv	map_l250_m2_e1	het	54.4177	37.4555	99.4595	98.0055	736	1229	736	4	1	25.0000
asubramanian-gatk	SNP	tv	map_l150_m0_e0	het	32.4897	19.4161	99.4595	97.4792	552	2291	552	3	1	33.3333
egarrison-hhga	INDEL	D1_5	map_l125_m2_e1	homalt	99.1914	98.9247	99.4595	86.5160	368	4	368	2	2	100.0000
dgrover-gatk	INDEL	D1_5	map_l125_m2_e1	homalt	99.1914	98.9247	99.4595	86.3921	368	4	368	2	2	100.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	97.9619	96.5087	99.4595	77.8443	387	14	368	2	2	100.0000
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.7829	92.3684	99.4595	64.7619	351	29	368	2	2	100.0000
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.5180	99.5769	99.4593	62.5780	11061	47	11036	60	22	36.6667
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7043	99.9506	99.4592	57.8271	6069	3	6069	33	32	96.9697
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3822	99.3056	99.4590	87.2487	1287	9	1287	7	6	85.7143

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