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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
20551-20600 / 86044 show all
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7333
100.0000
99.4681
59.7861
374037421
50.0000
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
98.8436
98.2270
99.4681
63.1613
5541056133
100.0000
ltrigg-rtg1INDELI1_5map_l100_m2_e0het
97.1596
94.9559
99.4681
76.3893
7534074840
0.0000
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
98.2885
97.1365
99.4681
47.3280
10109298100985438
70.3704
ltrigg-rtg1INDEL*map_sirenhomalt
99.1870
98.9077
99.4679
78.0366
26262926171410
71.4286
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6445
99.8219
99.4677
58.2805
392473924212
9.5238
gduggal-bwavardSNPtifunc_cdshet
99.2690
99.0710
99.4677
32.1944
84257984094515
33.3333
gduggal-snapvardSNP*func_cdshet
99.2494
99.0323
99.4675
33.3113
11053108110205921
35.5932
cchapple-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.0389
96.6511
99.4672
62.4367
6205215119486447
73.4375
cchapple-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.0389
96.6511
99.4672
62.4367
6205215119486447
73.4375
ckim-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0504
98.6372
99.4670
77.6637
152021149382
25.0000
raldana-dualsentieonINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
98.3658
97.2888
99.4670
68.3001
9332693355
100.0000
hfeng-pmm2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.4023
95.4216
99.4669
60.8921
802438580234332
74.4186
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
83.4621
71.8941
99.4667
29.5113
35313837322
100.0000
jlack-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
95.4742
91.7900
99.4666
33.0334
961586096975246
88.4615
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3588
95.3386
99.4664
56.7621
41315202041569223143
64.1256
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
93.3120
87.8747
99.4664
36.3431
718299122371212
100.0000
jmaeng-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.1071
92.9674
99.4662
64.2038
5424155932
66.6667
gduggal-bwaplatSNPtvmap_siren*
88.3540
79.4753
99.4660
75.2106
3650394273650719650
25.5102
hfeng-pmm1INDELD16_PLUS*homalt
99.2597
99.0544
99.4659
65.7799
167616167694
44.4444
hfeng-pmm1SNP*map_l150_m2_e1het
99.1153
98.7674
99.4657
76.0302
201122512010610827
25.0000
ltrigg-rtg2INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.7873
98.1180
99.4657
52.4428
15745302156378458
69.0476
qzeng-customSNPtvmap_sirenhomalt
92.1926
85.9107
99.4656
52.8075
148112429147057975
94.9367
jli-customINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
98.9669
98.4733
99.4656
72.6845
167726167592
22.2222
hfeng-pmm1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.2713
95.1718
99.4655
60.8421
800340680024327
62.7907
hfeng-pmm1INDELI1_5map_l125_m0_e0het
97.8850
96.3542
99.4652
88.8955
185718610
0.0000
gduggal-snapvardINDEL*func_cdshomalt
88.1855
79.2035
99.4652
24.2915
1794718611
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0678
92.8947
99.4652
64.2789
3532737222
100.0000
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
98.4760
97.5062
99.4652
82.0365
3911037221
50.0000
jlack-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.4853
99.5058
99.4648
66.6987
48322448322614
53.8462
raldana-dualsentieonINDEL***
99.1095
98.7566
99.4648
57.7282
340258428434012018301626
88.8525
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.3292
95.2834
99.4647
22.7525
650532265043534
97.1429
jlack-gatkINDEL*HG002complexvarhet
99.3807
99.2967
99.4647
57.6016
4588732545527245124
50.6122
jlack-gatkINDELD1_5*homalt
99.6645
99.8651
99.4647
59.9060
488606648867263260
98.8593
hfeng-pmm1SNP*map_l150_m2_e0het
99.1127
98.7632
99.4646
75.9700
198842491987810727
25.2336
asubramanian-gatkINDELD1_5map_l100_m1_e0homalt
96.6121
93.9189
99.4643
83.9725
5563655731
33.3333
rpoplin-dv42INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
90.8516
83.6115
99.4643
62.4413
55110855733
100.0000
rpoplin-dv42INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
90.8516
83.6115
99.4643
62.4413
55110855733
100.0000
bgallagher-sentieonSNPtvmap_l250_m2_e0homalt
99.2513
99.0395
99.4641
86.2166
928992854
80.0000
gduggal-snapplatSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
82.6052
70.6331
99.4641
48.4530
92638592854
80.0000
astatham-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.9262
92.6316
99.4638
64.1001
3522837122
100.0000
hfeng-pmm3INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5480
99.6325
99.4637
71.3697
35241335241919
100.0000
ckim-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6970
99.9315
99.4637
76.0277
218841521884118117
99.1525
ckim-vqsrINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6856
99.9087
99.4636
76.0319
218792021879118117
99.1525
hfeng-pmm1SNP*map_l150_m0_e0homalt
99.5848
99.7065
99.4633
76.6851
4077124077227
31.8182
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
98.2998
97.1631
99.4633
61.2613
5481655633
100.0000
hfeng-pmm3SNP*map_l150_m0_e0homalt
99.5725
99.6821
99.4632
76.5815
4076134076227
31.8182
jli-customSNP*map_l150_m2_e1*
99.1717
98.8823
99.4628
73.1735
318503603184717259
34.3023
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.3559
99.2492
99.4628
72.8768
132210129675
71.4286
gduggal-bwafbSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.1862
98.9111
99.4628
53.1375
999211099985437
68.5185