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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
20501-20550 / 86044 show all
ckim-vqsrSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.1194
98.7685
99.4729
66.0097
3208403208178
47.0588
jli-customINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
95.2565
91.3831
99.4728
30.2126
1665157169898
88.8889
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.6389
97.8193
99.4723
75.3576
628014062213310
30.3030
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.6389
97.8193
99.4723
75.3576
628014062213310
30.3030
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7091
99.9470
99.4723
72.7691
188511885108
80.0000
ltrigg-rtg1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.2318
98.9924
99.4723
85.2271
786875440
0.0000
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.9501
98.4334
99.4723
83.2597
377637722
100.0000
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7091
99.9470
99.4723
72.1242
188511885109
90.0000
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.5565
95.7135
99.4720
43.1314
13174590133757170
98.5915
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.6825
99.8940
99.4720
72.6656
188421884108
80.0000
gduggal-bwaplatSNPtimap_siren*
90.8656
83.6301
99.4716
68.7099
839271642883958446118
26.4574
hfeng-pmm3INDELI16_PLUS*het
98.6061
97.7557
99.4715
72.8336
2657612635143
21.4286
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.5465
99.6219
99.4711
83.1776
2635102633148
57.1429
raldana-dualsentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.9932
98.5200
99.4710
64.4487
17308260172999210
10.8696
rpoplin-dv42INDELI1_5map_l125_m0_e0het
98.4224
97.3958
99.4709
88.5938
187518810
0.0000
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.4824
99.4939
99.4709
56.5517
13767131671
14.2857
gduggal-bwafbSNPtvmap_l250_m0_e0homalt
98.4293
97.4093
99.4709
94.3430
188518811
100.0000
asubramanian-gatkSNPtimap_l250_m0_e0het
33.4817
20.1285
99.4709
99.1011
18874618811
100.0000
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.3014
97.1593
99.4708
45.1343
14365420142847668
89.4737
cchapple-customSNPtv*het
99.6701
99.8702
99.4708
26.9512
5909287685915533147233
7.4039
jli-customSNP*map_l150_m1_e0*
99.1511
98.8337
99.4706
71.1384
302523573024916158
36.0248
qzeng-customINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.4721
99.4737
99.4705
36.2584
13237131577
100.0000
gduggal-bwaplatSNP*map_siren*
90.0933
82.3317
99.4705
71.0074
12039225836120427641167
26.0530
ltrigg-rtg2INDELD6_15**
98.6807
97.9036
99.4704
46.9068
255455472535413583
61.4815
hfeng-pmm1SNPtimap_l150_m1_e0het
99.0951
98.7227
99.4704
74.9167
12212158122086517
26.1538
hfeng-pmm3INDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.6460
99.8227
99.4700
72.0632
563156333
100.0000
gduggal-bwavardSNPtimap_l250_m2_e0homalt
98.3503
97.2556
99.4700
88.0085
170148168996
66.6667
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.6073
99.7455
99.4695
62.0342
784275040
0.0000
gduggal-bwaplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
69.8324
53.8020
99.4695
52.3990
37532237522
100.0000
ckim-dragenINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.6296
93.9474
99.4695
63.7151
3572337522
100.0000
egarrison-hhgaSNPtvmap_l250_m2_e0*
98.5111
97.5711
99.4694
87.5099
2812702812157
46.6667
ckim-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5960
99.7232
99.4692
61.2535
554771545546629629
9.7973
bgallagher-sentieonSNPtvmap_l250_m2_e1homalt
99.2585
99.0486
99.4692
86.2982
937993754
80.0000
ckim-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.1730
98.8786
99.4691
69.5432
149917149982
25.0000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.2387
99.0092
99.4691
88.8279
149915149987
87.5000
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
98.2211
97.0040
99.4690
43.1148
13372413133017168
95.7746
jlack-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
95.8359
92.4591
99.4688
63.5748
859570186134642
91.3043
egarrison-hhgaSNPtisegduphet
99.5306
99.5927
99.4687
89.2156
119814911981642
3.1250
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2612
99.0548
99.4685
84.3994
2620252620146
42.8571
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.3467
99.2253
99.4684
49.9176
1178392117876354
85.7143
rpoplin-dv42SNPtvmap_sirenhet
99.4388
99.4093
99.4683
57.2644
284401692843615265
42.7632
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.0024
96.5790
99.4683
68.2096
15527550155288369
83.1325
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0024
96.5790
99.4683
68.2096
15527550155288369
83.1325
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
96.7794
94.2322
99.4681
58.4858
130780130971
14.2857
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7333
100.0000
99.4681
59.3514
374037421
50.0000
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7333
100.0000
99.4681
59.3074
374037421
50.0000
hfeng-pmm2SNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
98.6498
97.8448
99.4681
65.4748
3178703179170
0.0000
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7333
100.0000
99.4681
58.4530
374037421
50.0000
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7333
100.0000
99.4681
59.4391
374037421
50.0000
anovak-vgSNPtimap_l250_m2_e1homalt
85.1502
74.4357
99.4681
88.0298
1319453130975
71.4286