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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
20451-20500 / 86044 show all
ltrigg-rtg2INDEL*map_l125_m2_e1homalt
98.8303
98.1912
99.4778
81.6483
7601476241
25.0000
dgrover-gatkINDELD6_15*hetalt
97.1534
94.9352
99.4777
33.7944
776041478094139
95.1220
gduggal-snapvardSNP*map_l250_m1_e0homalt
96.4845
93.6663
99.4776
87.2382
23071562285129
75.0000
cchapple-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.3846
99.2919
99.4776
66.9410
3225233237173
17.6471
gduggal-bwaplatINDELI1_5HG002complexvarhomalt
95.0189
90.9429
99.4774
52.2999
122301218121836450
78.1250
jlack-gatkINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.7688
94.2040
99.4772
35.3452
121975133277
100.0000
cchapple-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.8248
96.2264
99.4772
49.0761
7142832351715
88.2353
ckim-dragenINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.6173
97.7724
99.4771
72.6068
15230347152188060
75.0000
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.6115
86.6324
99.4771
37.4276
235936424731312
92.3077
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.6338
95.8574
99.4771
65.4659
15411666154118171
87.6543
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.6338
95.8574
99.4771
65.4659
15411666154118171
87.6543
rpoplin-dv42INDELI1_5**
99.2493
99.0230
99.4767
57.6844
1491921472149236785730
92.9936
ndellapenna-hhgaINDELD16_PLUSHG002compoundhethetalt
63.9739
47.1473
99.4764
32.8056
909101976043
75.0000
ndellapenna-hhgaSNPtvmap_l250_m0_e0homalt
98.9583
98.4456
99.4764
91.6630
190319011
100.0000
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
99.4888
99.5012
99.4764
82.1911
399238021
50.0000
gduggal-bwavardSNPtimap_l250_m2_e1homalt
98.3428
97.2348
99.4764
88.0642
172349171096
66.6667
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.3191
99.1623
99.4764
77.1586
947895051
20.0000
dgrover-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
99.3640
99.2519
99.4764
81.8355
398338021
50.0000
egarrison-hhgaSNPtvmap_l250_m0_e0homalt
98.9583
98.4456
99.4764
92.2735
190319011
100.0000
hfeng-pmm1INDELI1_5map_l100_m1_e0het
98.3748
97.2973
99.4764
82.8507
7562176040
0.0000
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
95.0000
90.9091
99.4764
75.1625
1901919011
100.0000
hfeng-pmm3SNPtvmap_l100_m0_e0*
99.4268
99.3775
99.4762
69.0933
110156911014588
13.7931
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.5103
99.5446
99.4760
35.3827
72143372143838
100.0000
hfeng-pmm1SNPtimap_l150_m2_e0het
99.1156
98.7579
99.4759
76.0299
12721160127176717
25.3731
egarrison-hhgaSNPtvmap_l250_m2_e1*
98.5286
97.5995
99.4757
87.5868
2846702846157
46.6667
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
98.2308
97.0167
99.4755
56.4489
556117156903015
50.0000
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.4842
97.5124
99.4755
64.3614
5881556930
0.0000
mlin-fermikitINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
81.6561
69.2510
99.4755
31.4587
2635117026551414
100.0000
dgrover-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6673
99.8600
99.4754
57.8446
178262517825945
5.3192
dgrover-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.6743
99.8742
99.4753
60.5238
55561705555029327
9.2150
ckim-isaacSNPtvmap_l250_m1_e0*
60.0000
42.9543
99.4751
90.6960
11371510113761
16.6667
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
99.2382
99.0025
99.4751
81.5138
397437921
50.0000
astatham-gatkSNPtvmap_l100_m0_e0het
89.5033
81.3487
99.4750
78.3064
587513475874317
22.5806
ndellapenna-hhgaSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4059
99.3368
99.4750
48.7096
1003567100435344
83.0189
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.9159
94.4855
99.4747
56.3830
793346379534213
30.9524
hfeng-pmm3INDEL*map_sirenhomalt
99.4733
99.4727
99.4739
78.7290
2641142647149
64.2857
hfeng-pmm3INDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
98.4375
97.4227
99.4737
74.0968
3781037821
50.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0826
98.6945
99.4737
82.8674
378537821
50.0000
astatham-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
99.1121
98.7531
99.4737
81.8095
396537821
50.0000
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
94.2643
89.5735
99.4737
41.3580
1892218910
0.0000
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
87.3267
77.8234
99.4737
73.5744
37910837821
50.0000
gduggal-bwaplatINDELI1_5map_l150_m2_e1het
74.5562
59.6215
99.4737
96.5316
18912818910
0.0000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.3589
99.2443
99.4737
85.1185
788675640
0.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
99.2375
99.0025
99.4737
82.2678
397437821
50.0000
hfeng-pmm1SNPtimap_l150_m2_e1het
99.1170
98.7630
99.4736
76.1158
12854161128506817
25.0000
hfeng-pmm1INDELI6_15*het
98.8608
98.2558
99.4734
57.1305
985817598235234
65.3846
cchapple-customINDELD1_5map_sirenhomalt
98.7468
98.0308
99.4732
77.4812
114523113364
66.6667
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.9332
98.3991
99.4731
46.9555
2643432643140
0.0000
ltrigg-rtg1INDELD6_15HG002compoundhethetalt
96.2297
93.1910
99.4731
25.6779
759655575524040
100.0000
jli-customSNP*map_l100_m0_e0*
99.1662
98.8612
99.4730
63.5990
324673743246717259
34.3023