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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 399 400 401 402 403 404 405 406 407 ... 1720 1721 » 20101-20150 / 86044 show all
jpowers-varprowl	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.1706	98.8297	99.5138	43.4464	2449	29	2456	12	0	0.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.0941	94.7894	99.5137	51.5749	6549	360	6548	32	28	87.5000
gduggal-bwavard	SNP	tv	func_cds	*	99.0223	98.5358	99.5136	36.8583	4307	64	4296	21	9	42.8571
ltrigg-rtg2	INDEL	*	*	het	99.3348	99.1568	99.5135	56.1055	192496	1637	191657	937	230	24.5464
ckim-vqsr	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1361	98.7615	99.5135	67.2304	4705	59	4705	23	10	43.4783
jlack-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.8828	94.3878	99.5134	33.1707	740	44	818	4	4	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3925	99.2718	99.5134	71.4682	818	6	818	4	1	25.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.7884	96.1222	99.5134	88.6370	818	33	818	4	4	100.0000
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2158	98.9203	99.5131	53.0673	2657	29	2657	13	2	15.3846
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.5450	99.5769	99.5131	63.1488	11061	47	11036	54	17	31.4815
dgrover-gatk	SNP	*	map_l100_m2_e0	*	99.4963	99.4795	99.5130	68.3628	73579	385	73568	360	79	21.9444
bgallagher-sentieon	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.8385	87.0031	99.5129	39.9105	3327	497	3473	17	16	94.1176
hfeng-pmm3	SNP	*	map_l125_m1_e0	het	99.4129	99.3132	99.5129	70.9946	28197	195	28191	138	13	9.4203
ckim-vqsr	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.3918	87.9802	99.5128	30.5121	1603	219	1634	8	8	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.3918	87.9802	99.5128	30.5121	1603	219	1634	8	8	100.0000
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	98.4486	97.4071	99.5127	25.8925	5297	141	5309	26	25	96.1538
jli-custom	INDEL	D1_5	*	hetalt	97.3277	95.2367	99.5126	64.3126	9757	488	9801	48	46	95.8333
hfeng-pmm3	SNP	*	map_l150_m1_e0	*	99.4475	99.3825	99.5125	74.0748	30420	189	30414	149	23	15.4362
hfeng-pmm3	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.6812	95.9164	99.5121	62.7887	5097	217	5099	25	19	76.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.9107	94.4420	99.5119	50.8251	6525	384	6524	32	25	78.1250
ckim-vqsr	SNP	ti	map_siren	het	91.0834	83.9713	99.5117	71.3937	52383	9999	52376	257	20	7.7821
gduggal-snapplat	SNP	*	HG002compoundhet	hetalt	97.1488	94.8956	99.5116	22.8814	818	44	815	4	4	100.0000
gduggal-snapplat	SNP	tv	HG002compoundhet	hetalt	97.1488	94.8956	99.5116	22.8814	818	44	815	4	4	100.0000
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.0778	85.6776	99.5114	35.1466	2333	390	2444	12	12	100.0000
ltrigg-rtg1	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5464	99.5815	99.5114	49.8381	27842	117	27901	137	8	5.8394
ltrigg-rtg2	INDEL	*	HG002complexvar	*	98.9919	98.4780	99.5112	54.8986	75766	1171	75523	371	227	61.1860
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.3919	95.3611	99.5111	32.7822	6496	316	6513	32	32	100.0000
ndellapenna-hhga	SNP	ti	map_l250_m1_e0	het	97.6313	95.8221	99.5101	88.0937	2844	124	2844	14	6	42.8571
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6636	99.8179	99.5098	78.3746	548	1	609	3	2	66.6667
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.8706	96.2846	99.5098	88.3340	1218	47	1218	6	6	100.0000
astatham-gatk	SNP	ti	map_l150_m0_e0	*	93.2170	87.6733	99.5090	82.5398	6892	969	6890	34	15	44.1176
astatham-gatk	INDEL	D1_5	map_l100_m2_e0	homalt	99.5090	99.5090	99.5090	83.7888	608	3	608	3	2	66.6667
rpoplin-dv42	SNP	ti	map_l125_m2_e0	*	99.3062	99.1044	99.5088	70.7721	29987	271	29983	148	102	68.9189
gduggal-bwavard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	52.7219	35.8609	99.5087	32.6223	1835	3282	1823	9	8	88.8889
jmaeng-gatk	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.9241	87.1570	99.5086	30.3082	1588	234	1620	8	8	100.0000
bgallagher-sentieon	SNP	*	map_siren	*	99.5992	99.6902	99.5084	55.5562	145775	453	145752	720	102	14.1667
ltrigg-rtg2	INDEL	D1_5	HG002complexvar	*	99.1938	98.8812	99.5083	54.2253	32349	366	32179	159	100	62.8931
bgallagher-sentieon	INDEL	I1_5	map_siren	homalt	99.6711	99.8350	99.5078	78.1149	1210	2	1213	6	4	66.6667
astatham-gatk	INDEL	I1_5	map_siren	homalt	99.6711	99.8350	99.5078	78.3135	1210	2	1213	6	4	66.6667
ndellapenna-hhga	SNP	tv	segdup	homalt	99.6917	99.8765	99.5077	90.2309	3234	4	3234	16	16	100.0000
mlin-fermikit	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.6267	97.7614	99.5075	53.2307	3843	88	3839	19	2	10.5263
asubramanian-gatk	SNP	ti	map_l250_m1_e0	het	33.8831	20.4178	99.5074	98.4836	606	2362	606	3	1	33.3333
ckim-vqsr	INDEL	D1_5	map_l100_m2_e0	homalt	99.3443	99.1817	99.5074	84.1571	606	5	606	3	2	66.6667
dgrover-gatk	INDEL	I1_5	map_siren	homalt	99.6298	99.7525	99.5074	78.6951	1209	3	1212	6	4	66.6667
jli-custom	INDEL	D1_5	map_l100_m2_e0	homalt	99.3443	99.1817	99.5074	82.7381	606	5	606	3	3	100.0000
jli-custom	INDEL	I1_5	map_siren	homalt	99.6709	99.8350	99.5074	76.9711	1210	2	1212	6	3	50.0000
gduggal-bwaplat	INDEL	D1_5	map_l100_m2_e0	homalt	79.4494	66.1211	99.5074	87.9739	404	207	404	2	1	50.0000
jpowers-varprowl	INDEL	*	func_cds	homalt	94.1725	89.3805	99.5074	31.4189	202	24	202	1	1	100.0000
ckim-gatk	INDEL	D1_5	map_l100_m2_e0	homalt	99.3443	99.1817	99.5074	84.1571	606	5	606	3	2	66.6667
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4124	99.3179	99.5070	45.2160	1456	10	1413	7	2	28.5714

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