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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 395 396 397 398 399 400 401 402 403 ... 1720 1721 » 19901-19950 / 86044 show all
ckim-vqsr	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.9845	98.4426	99.5324	77.7099	1517	24	1490	7	2	28.5714
ckim-vqsr	INDEL	*	*	het	99.5204	99.5086	99.5323	62.3713	193179	954	192796	906	561	61.9205
hfeng-pmm2	SNP	ti	map_l100_m2_e0	*	99.5384	99.5445	99.5323	66.9341	48738	223	48731	229	30	13.1004
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.4121	97.3169	99.5323	46.2505	21653	597	21709	102	62	60.7843
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6527	99.7736	99.5322	54.5761	6170	14	6170	29	0	0.0000
raldana-dualsentieon	SNP	tv	map_l250_m1_e0	homalt	99.4740	99.4159	99.5322	84.0366	851	5	851	4	2	50.0000
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.5322	99.5322	99.5322	58.8745	851	4	851	4	0	0.0000
hfeng-pmm1	SNP	ti	map_l100_m0_e0	het	99.2035	98.8772	99.5320	69.1542	13826	157	13823	65	16	24.6154
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.5589	95.6625	99.5320	31.5275	8888	403	8932	42	40	95.2381
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.5589	95.6625	99.5320	31.5275	8888	403	8932	42	40	95.2381
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.8911	98.2585	99.5318	46.2230	1467	26	1488	7	7	100.0000
ltrigg-rtg2	INDEL	I16_PLUS	HG002compoundhet	hetalt	90.2840	82.6087	99.5316	37.2520	1729	364	1700	8	8	100.0000
hfeng-pmm1	INDEL	I1_5	map_siren	*	99.1319	98.7354	99.5316	79.6028	2967	38	2975	14	4	28.5714
rpoplin-dv42	SNP	ti	map_l250_m0_e0	homalt	98.4936	97.4771	99.5316	91.1005	425	11	425	2	2	100.0000
ckim-isaac	INDEL	*	func_cds	*	97.5940	95.7303	99.5316	35.2049	426	19	425	2	1	50.0000
gduggal-bwavard	SNP	*	segdup	homalt	98.6646	97.8125	99.5315	88.9251	10508	235	10411	49	47	95.9184
gduggal-bwaplat	SNP	ti	map_l250_m1_e0	*	54.0102	37.0605	99.5311	97.1343	1697	2882	1698	8	2	25.0000
ndellapenna-hhga	INDEL	I1_5	HG002compoundhet	hetalt	97.1229	94.8287	99.5310	57.0294	10599	578	10611	50	44	88.0000
ndellapenna-hhga	SNP	*	map_l250_m2_e0	*	98.1811	96.8675	99.5309	87.5400	7638	247	7638	36	19	52.7778
ckim-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3055	99.0812	99.5308	74.4619	63839	592	63852	301	259	86.0465
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6475	99.7647	99.5305	49.7048	848	2	848	4	4	100.0000
jli-custom	SNP	tv	map_l250_m1_e0	homalt	99.2974	99.0654	99.5305	84.1518	848	8	848	4	4	100.0000
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	94.1217	89.2704	99.5305	73.3750	208	25	212	1	1	100.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6475	99.7647	99.5305	50.8083	848	2	848	4	4	100.0000
jli-custom	INDEL	*	func_cds	het	99.2974	99.0654	99.5305	45.8015	212	2	212	1	0	0.0000
gduggal-bwafb	SNP	*	*	het	99.6957	99.8616	99.5303	23.9839	1871007	2594	1871215	8830	595	6.7384
gduggal-bwaplat	SNP	*	map_l250_m1_e0	*	51.9747	35.1703	99.5300	97.3642	2540	4682	2541	12	3	25.0000
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	98.5228	97.5359	99.5300	31.9212	5304	134	5294	25	25	100.0000
ltrigg-rtg1	SNP	ti	map_l250_m0_e0	*	95.9940	92.7007	99.5298	87.7555	1270	100	1270	6	3	50.0000
hfeng-pmm2	SNP	ti	map_l150_m0_e0	homalt	99.6019	99.6740	99.5298	75.8368	2752	9	2752	13	5	38.4615
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5296	99.5296	99.5296	81.1592	1058	5	1058	5	2	40.0000
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.5123	99.4950	99.5296	71.9110	28567	145	28561	135	47	34.8148
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.5123	99.4950	99.5296	71.9110	28567	145	28561	135	47	34.8148
astatham-gatk	SNP	ti	map_l250_m0_e0	homalt	98.2578	97.0183	99.5294	90.9651	423	13	423	2	2	100.0000
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	hetalt	75.7194	61.1022	99.5294	32.2169	765	487	846	4	3	75.0000
jli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	98.6732	97.8316	99.5294	30.3849	767	17	846	4	4	100.0000
ndellapenna-hhga	SNP	ti	map_l250_m2_e1	het	97.7791	96.0897	99.5290	88.4572	3170	129	3170	15	6	40.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.1784	98.8304	99.5289	53.9837	845	10	845	4	0	0.0000
jli-custom	SNP	ti	map_l150_m2_e0	*	99.2101	98.8933	99.5289	73.1343	20285	227	20283	96	36	37.5000
jli-custom	SNP	ti	map_l150_m2_e1	*	99.2158	98.9046	99.5289	73.2251	20496	227	20494	97	36	37.1134
ltrigg-rtg1	INDEL	D6_15	*	*	98.2810	97.0642	99.5288	47.5098	25326	766	25133	119	76	63.8655
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6234	99.7183	99.5287	62.3224	1062	3	1056	5	3	60.0000
jpowers-varprowl	SNP	ti	func_cds	*	99.5285	99.5285	99.5285	26.5751	13722	65	13722	65	9	13.8462
ckim-dragen	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.2779	95.1269	99.5285	62.9323	8843	453	8865	42	42	100.0000
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.1933	87.6162	99.5285	30.2073	2073	293	2111	10	10	100.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	48.4185	211	0	211	1	0	0.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	47.2637	211	0	211	1	0	0.0000
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	45.6410	211	0	211	1	0	0.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	45.3608	211	0	211	1	0	0.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	45.6410	211	0	211	1	0	0.0000

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