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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 394 395 396 397 398 399 400 401 402 ... 1720 1721 » 19851-19900 / 86044 show all
jli-custom	SNP	tv	map_l100_m2_e1	*	99.4258	99.3157	99.5362	64.2630	25110	173	25109	117	30	25.6410
ltrigg-rtg1	SNP	*	segdup	homalt	99.7351	99.9348	99.5361	88.6997	10736	7	10729	50	50	100.0000
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3136	99.0921	99.5361	73.0198	1528	14	1502	7	5	71.4286
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.4632	95.4749	99.5360	33.1882	10001	474	10083	47	46	97.8723
ndellapenna-hhga	SNP	ti	map_l250_m0_e0	homalt	98.9619	98.3945	99.5360	89.9276	429	7	429	2	2	100.0000
raldana-dualsentieon	SNP	ti	map_l250_m0_e0	homalt	98.9619	98.3945	99.5360	89.7625	429	7	429	2	1	50.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3818	99.2284	99.5356	87.4927	1286	10	1286	6	6	100.0000
jli-custom	SNP	tv	map_l100_m2_e0	*	99.4221	99.3089	99.5355	64.2177	24860	173	24859	116	30	25.8621
hfeng-pmm2	SNP	ti	segdup	*	99.6754	99.8157	99.5355	89.6871	19501	36	19499	91	9	9.8901
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	94.3059	89.5985	99.5353	25.4660	7253	842	7283	34	30	88.2353
ndellapenna-hhga	INDEL	I1_5	*	het	99.3796	99.2245	99.5353	57.8169	78428	613	78394	366	178	48.6339
ckim-vqsr	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4494	99.3637	99.5353	61.3550	55277	354	55266	258	27	10.4651
hfeng-pmm1	SNP	ti	segdup	het	99.6179	99.7007	99.5352	89.0346	11994	36	11992	56	0	0.0000
hfeng-pmm2	SNP	ti	map_l100_m2_e1	*	99.5423	99.5494	99.5352	66.9275	49262	223	49255	230	30	13.0435
asubramanian-gatk	SNP	*	map_l250_m2_e0	*	31.9242	19.0108	99.5352	98.3542	1499	6386	1499	7	1	14.2857
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.2854	93.2411	99.5352	28.3262	9767	708	9850	46	46	100.0000
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.5932	99.6513	99.5352	81.3843	6859	24	6853	32	18	56.2500
ltrigg-rtg1	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5600	99.5848	99.5352	55.2358	55400	231	55463	259	19	7.3359
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1285	98.7253	99.5351	51.6909	3640	47	3640	17	14	82.3529
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.2751	93.2220	99.5351	28.3303	9765	710	9848	46	46	100.0000
ndellapenna-hhga	SNP	tv	map_l100_m0_e0	het	98.6590	97.7984	99.5349	67.9349	7063	159	7063	33	13	39.3939
ckim-isaac	SNP	ti	HG002compoundhet	homalt	91.0386	83.8788	99.5347	26.2921	6202	1192	6203	29	24	82.7586
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.4505	99.3666	99.5347	87.4509	2353	15	2353	11	10	90.9091
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.0894	96.6856	99.5346	57.0832	30367	1041	30368	142	126	88.7324
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.0894	96.6856	99.5346	57.0832	30367	1041	30368	142	126	88.7324
rpoplin-dv42	SNP	*	map_l100_m1_e0	*	99.3983	99.2625	99.5346	63.1596	71869	534	71858	336	196	58.3333
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.8899	98.2537	99.5345	61.1292	1069	19	1069	5	3	60.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.2650	98.9969	99.5345	87.4939	1283	13	1283	6	4	66.6667
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.4293	99.3243	99.5345	87.4555	2352	16	2352	11	10	90.9091
ndellapenna-hhga	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4700	99.4059	99.5342	55.3861	20079	120	20088	94	83	88.2979
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	97.0365	94.6613	99.5340	28.2145	6791	383	6835	32	30	93.7500
mlin-fermikit	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	98.2999	97.0961	99.5339	37.5098	11101	332	11105	52	7	13.4615
dgrover-gatk	SNP	ti	map_l250_m0_e0	homalt	98.7283	97.9358	99.5338	91.1982	427	9	427	2	1	50.0000
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.7664	100.0000	99.5338	39.4410	2138	0	2135	10	2	20.0000
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5931	99.6524	99.5338	59.0453	860	3	854	4	3	75.0000
jli-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.8509	96.2242	99.5336	65.6849	8945	351	8964	42	41	97.6190
ckim-dragen	SNP	*	map_l150_m0_e0	homalt	99.3015	99.0707	99.5334	70.2317	4051	38	4053	19	16	84.2105
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4172	99.3015	99.5333	49.8126	4265	30	4265	20	3	15.0000
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.6495	99.7661	99.5333	55.1309	853	2	853	4	1	25.0000
gduggal-bwaplat	INDEL	D1_5	*	homalt	94.9240	90.7227	99.5332	62.2451	44387	4539	44353	208	178	85.5769
bgallagher-sentieon	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.7144	99.8963	99.5331	54.5778	27930	29	27929	131	10	7.6336
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5093	99.4855	99.5331	74.9202	2127	11	2345	11	9	81.8182
astatham-gatk	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0504	98.5724	99.5330	77.2638	1519	22	1492	7	2	28.5714
gduggal-bwavard	INDEL	D1_5	map_l150_m1_e0	homalt	97.5340	95.6140	99.5327	83.1893	218	10	213	1	1	100.0000
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5663	99.6000	99.5327	76.7518	2988	12	2982	14	4	28.5714
ckim-dragen	INDEL	*	HG002complexvar	*	99.3944	99.2565	99.5327	58.0987	76366	572	76037	357	301	84.3137
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5496	99.5667	99.5326	76.5043	2987	13	2981	14	4	28.5714
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.0944	96.6971	99.5326	66.9886	15546	531	15546	73	43	58.9041
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.0944	96.6971	99.5326	66.9886	15546	531	15546	73	43	58.9041
ckim-dragen	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0173	98.5075	99.5324	77.0540	1518	23	1490	7	3	42.8571

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