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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 393 394 395 396 397 398 399 400 401 ... 1720 1721 » 19801-19850 / 86044 show all
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.9787	98.4234	99.5402	73.1978	437	7	433	2	0	0.0000
gduggal-snapplat	SNP	tv	func_cds	*	99.2890	99.0391	99.5401	39.3276	4329	42	4329	20	0	0.0000
hfeng-pmm1	SNP	tv	map_l150_m2_e0	*	99.3292	99.1193	99.5400	75.2398	11255	100	11253	52	14	26.9231
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6018	99.6636	99.5400	55.7604	11258	38	11253	52	41	78.8462
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	95.1927	91.2096	99.5395	87.2592	1297	125	1297	6	4	66.6667
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.2746	89.5387	99.5395	27.7522	7318	855	7349	34	30	88.2353
jlack-gatk	INDEL	D1_5	HG002compoundhet	hetalt	95.0540	90.9554	99.5394	57.6003	9292	924	9293	43	40	93.0233
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.2969	95.1533	99.5393	51.1225	36065	1837	36299	168	133	79.1667
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	65.8537	49.2027	99.5392	51.5625	216	223	216	1	1	100.0000
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	79.2661	65.8537	99.5392	53.0303	216	112	216	1	1	100.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7691	100.0000	99.5392	66.1466	216	0	216	1	1	100.0000
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	95.0712	90.9871	99.5392	72.7044	212	21	216	1	1	100.0000
hfeng-pmm3	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7691	100.0000	99.5392	64.2504	216	0	216	1	1	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.2509	96.9956	99.5391	72.8687	15109	468	15117	70	47	67.1429
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.2193	95.0054	99.5389	60.9375	7989	420	7988	37	23	62.1622
hfeng-pmm2	SNP	ti	map_l100_m1_e0	*	99.5399	99.5410	99.5389	65.3094	47711	220	47704	221	30	13.5747
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.6154	86.5925	99.5389	29.1978	1479	229	1511	7	7	100.0000
asubramanian-gatk	SNP	*	map_l250_m1_e0	*	30.3884	17.9313	99.5388	98.3683	1295	5927	1295	6	1	16.6667
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	96.8542	94.3107	99.5386	63.3094	862	52	863	4	0	0.0000
egarrison-hhga	SNP	tv	HG002compoundhet	het	98.2001	96.8971	99.5386	52.4849	4528	145	4530	21	10	47.6190
egarrison-hhga	SNP	ti	map_l250_m0_e0	homalt	99.1945	98.8532	99.5381	90.7121	431	5	431	2	2	100.0000
jli-custom	SNP	ti	map_l250_m0_e0	homalt	99.1945	98.8532	99.5381	89.7296	431	5	431	2	2	100.0000
jlack-gatk	SNP	tv	map_l150_m0_e0	homalt	98.4393	97.3645	99.5381	76.5184	1293	35	1293	6	4	66.6667
gduggal-bwavard	INDEL	*	segdup	homalt	94.7011	90.3125	99.5381	91.1777	867	93	862	4	4	100.0000
raldana-dualsentieon	INDEL	I1_5	*	homalt	99.6902	99.8428	99.5381	54.0742	60333	95	60337	280	279	99.6429
hfeng-pmm2	SNP	*	segdup	*	99.6762	99.8147	99.5380	90.2632	28015	52	28009	130	13	10.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2047	98.8739	99.5378	72.9132	1317	15	1292	6	4	66.6667
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5949	99.6524	99.5376	63.4713	860	3	861	4	3	75.0000
ckim-dragen	SNP	ti	*	het	99.7466	99.9566	99.5375	22.8315	1281335	556	1281494	5955	318	5.3401
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.5684	97.6181	99.5374	83.6927	2582	63	2582	12	6	50.0000
gduggal-bwaplat	INDEL	I6_15	HG002compoundhet	hetalt	85.9482	75.6238	99.5374	35.2988	6456	2081	6455	30	20	66.6667
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.6381	99.7391	99.5373	34.1584	3441	9	3442	16	3	18.7500
ckim-gatk	INDEL	I1_5	*	*	99.3427	99.1491	99.5371	59.3239	149382	1282	149430	695	401	57.6978
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	94.8354	90.5579	99.5370	73.1009	211	22	215	1	1	100.0000
rpoplin-dv42	SNP	ti	map_l250_m2_e0	homalt	98.9359	98.3419	99.5370	87.6280	1720	29	1720	8	8	100.0000
rpoplin-dv42	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.4386	99.3404	99.5370	69.4360	1506	10	1505	7	2	28.5714
ckim-isaac	INDEL	D1_5	map_l125_m2_e1	homalt	73.1293	57.7957	99.5370	81.0360	215	157	215	1	1	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	94.8354	90.5579	99.5370	73.1009	211	22	215	1	1	100.0000
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	92.9493	87.1795	99.5370	80.2016	442	65	430	2	2	100.0000
gduggal-bwavard	SNP	tv	map_l150_m0_e0	homalt	98.2846	97.0633	99.5370	78.0859	1289	39	1290	6	4	66.6667
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	98.3982	97.2851	99.5370	91.0596	215	6	215	1	1	100.0000
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.3548	99.1736	99.5367	47.6794	10321	86	10312	48	43	89.5833
gduggal-bwavard	INDEL	D6_15	*	homalt	78.7719	65.1755	99.5366	41.1089	4123	2203	4081	19	14	73.6842
jmaeng-gatk	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.3401	86.1140	99.5366	37.1153	3293	531	3437	16	16	100.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4785	99.4206	99.5365	64.1313	858	5	859	4	3	75.0000
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.3391	99.1425	99.5364	69.3276	1503	13	1503	7	2	28.5714
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2793	99.0236	99.5363	51.7187	3651	36	3649	17	15	88.2353
hfeng-pmm2	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6591	99.7822	99.5363	71.5494	30694	67	30694	143	139	97.2028
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.3632	99.1908	99.5362	36.2528	1716	14	1717	8	6	75.0000
ltrigg-rtg2	SNP	*	segdup	homalt	99.7490	99.9628	99.5362	88.2598	10739	4	10731	50	50	100.0000

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