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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 390 391 392 393 394 395 396 397 398 ... 1720 1721 » 19651-19700 / 86044 show all
hfeng-pmm3	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	98.2518	96.9828	99.5546	70.6344	450	14	447	2	0	0.0000
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	99.7237	99.8934	99.5546	42.4719	4684	5	4694	21	2	9.5238
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3059	99.0585	99.5546	59.8847	19675	187	19668	88	46	52.2727
jmaeng-gatk	INDEL	D1_5	*	hetalt	96.3487	93.3431	99.5544	62.8913	9563	682	9606	43	43	100.0000
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	94.2768	89.5307	99.5544	31.1699	12323	1441	12511	56	50	89.2857
ndellapenna-hhga	SNP	ti	map_l250_m2_e0	het	97.7952	96.0971	99.5543	88.3585	3127	127	3127	14	6	42.8571
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.1719	93.0119	99.5542	28.6148	9743	732	9825	44	44	100.0000
rpoplin-dv42	INDEL	I16_PLUS	*	hetalt	91.5838	84.7950	99.5541	49.0051	1779	319	1786	8	7	87.5000
ckim-dragen	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4656	99.3773	99.5540	78.3693	6064	38	6027	27	7	25.9259
ckim-isaac	SNP	tv	map_l125_m2_e0	het	74.7458	59.8353	99.5540	75.8427	6248	4194	6250	28	7	25.0000
cchapple-custom	SNP	ti	HG002compoundhet	*	99.2669	98.9816	99.5539	35.4095	17300	178	17406	78	64	82.0513
rpoplin-dv42	SNP	ti	map_l100_m2_e0	het	99.3487	99.1444	99.5539	65.6465	30360	262	30352	136	82	60.2941
raldana-dualsentieon	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	98.1406	96.7672	99.5536	69.6682	449	15	446	2	1	50.0000
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	96.9979	94.5701	99.5536	89.9281	209	12	223	1	1	100.0000
ckim-dragen	INDEL	D1_5	map_l150_m1_e0	homalt	98.8953	98.2456	99.5536	87.4228	224	4	223	1	1	100.0000
jmaeng-gatk	INDEL	D1_5	map_l150_m1_e0	homalt	98.6726	97.8070	99.5536	87.8128	223	5	223	1	1	100.0000
ltrigg-rtg2	INDEL	D1_5	map_l150_m1_e0	homalt	98.6726	97.8070	99.5536	81.3644	223	5	223	1	1	100.0000
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	90.0617	82.2222	99.5536	68.6275	222	48	223	1	1	100.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	98.1406	96.7672	99.5536	71.0407	449	15	446	2	0	0.0000
mlin-fermikit	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	98.0092	96.5121	99.5535	31.2615	4455	161	4459	20	0	0.0000
ckim-vqsr	SNP	ti	segdup	*	98.8035	98.0652	99.5531	93.1259	19159	378	19157	86	7	8.1395
rpoplin-dv42	SNP	*	map_l150_m0_e0	homalt	98.7551	97.9702	99.5527	75.0450	4006	83	4006	18	17	94.4444
gduggal-bwaplat	INDEL	*	map_l125_m0_e0	*	66.9676	50.4535	99.5526	96.3322	445	437	445	2	0	0.0000
rpoplin-dv42	SNP	ti	map_l100_m2_e1	het	99.3494	99.1473	99.5523	65.6527	30696	264	30688	138	83	60.1449
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2264	98.9027	99.5522	39.1407	6670	74	6670	30	1	3.3333
ckim-isaac	SNP	tv	map_l125_m1_e0	het	74.2974	59.2633	99.5522	74.3164	6001	4125	6003	27	7	25.9259
jli-custom	SNP	*	map_l125_m1_e0	*	99.3178	99.0844	99.5522	66.7512	44912	415	44909	202	67	33.1683
ckim-isaac	SNP	*	HG002compoundhet	homalt	90.1933	82.4430	99.5521	29.8507	8889	1893	8890	40	35	87.5000
astatham-gatk	INDEL	D1_5	*	hetalt	97.2343	95.0220	99.5520	63.2355	9735	510	9778	44	43	97.7273
egarrison-hhga	INDEL	I1_5	HG002compoundhet	hetalt	97.3530	95.2492	99.5519	56.2316	10646	531	10663	48	44	91.6667
gduggal-bwaplat	SNP	ti	func_cds	het	99.4112	99.2709	99.5519	36.3268	8442	62	8442	38	4	10.5263
hfeng-pmm2	INDEL	*	func_cds	*	99.4386	99.3258	99.5516	44.3196	442	3	444	2	0	0.0000
hfeng-pmm1	INDEL	*	func_cds	*	99.4386	99.3258	99.5516	42.1530	442	3	444	2	0	0.0000
raldana-dualsentieon	INDEL	D1_5	map_l150_m1_e0	homalt	98.4479	97.3684	99.5516	86.1491	222	6	222	1	1	100.0000
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.6327	95.7867	99.5512	56.7594	2569	113	2662	12	12	100.0000
bgallagher-sentieon	SNP	tv	HG002compoundhet	het	99.6043	99.6576	99.5511	55.0192	4657	16	4657	21	5	23.8095
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.0809	94.7303	99.5510	41.4525	1528	85	5987	27	23	85.1852
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.4664	99.3822	99.5507	61.1367	4826	30	4874	22	10	45.4545
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4518	99.3532	99.5506	74.6799	768	5	886	4	2	50.0000
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7748	100.0000	99.5506	33.1832	443	0	443	2	2	100.0000
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7748	100.0000	99.5506	34.6549	443	0	443	2	2	100.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7748	100.0000	99.5506	34.7507	443	0	443	2	2	100.0000
qzeng-custom	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	92.3995	86.2069	99.5506	43.8131	975	156	443	2	2	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7748	100.0000	99.5506	34.4624	443	0	443	2	2	100.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.3974	99.2449	99.5503	79.5805	4206	32	4206	19	5	26.3158
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2155	98.8831	99.5502	52.7537	2656	30	2656	12	1	8.3333
bgallagher-sentieon	INDEL	D1_5	*	homalt	99.7512	99.9530	99.5502	62.3527	48903	23	48908	221	219	99.0950
ltrigg-rtg1	INDEL	I16_PLUS	HG002compoundhet	hetalt	85.8044	75.3942	99.5501	38.3274	1578	515	1549	7	7	100.0000
hfeng-pmm3	SNP	tv	map_l125_m1_e0	*	99.5034	99.4568	99.5500	69.7161	15929	87	15927	72	10	13.8889
ndellapenna-hhga	SNP	tv	map_l150_m2_e0	het	98.5727	97.6145	99.5500	73.8403	7079	173	7079	32	13	40.6250

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