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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 389 390 391 392 393 394 395 396 397 ... 1720 1721 » 19601-19650 / 86044 show all
hfeng-pmm3	SNP	*	map_l100_m0_e0	*	99.4850	99.4123	99.5578	68.0774	32648	193	32644	145	21	14.4828
jli-custom	INDEL	D1_5	map_l150_m1_e0	homalt	99.1189	98.6842	99.5575	86.5075	225	3	225	1	1	100.0000
cchapple-custom	INDEL	*	func_cds	homalt	99.5575	99.5575	99.5575	33.1361	225	1	225	1	1	100.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.4212	93.4764	99.5575	27.4245	6706	468	6750	30	29	96.6667
hfeng-pmm1	INDEL	D1_5	map_l150_m1_e0	homalt	99.1189	98.6842	99.5575	85.6690	225	3	225	1	1	100.0000
ckim-gatk	INDEL	D1_5	map_l150_m1_e0	homalt	99.1189	98.6842	99.5575	88.1053	225	3	225	1	1	100.0000
ckim-vqsr	INDEL	D1_5	map_l150_m1_e0	homalt	99.1189	98.6842	99.5575	88.1053	225	3	225	1	1	100.0000
bgallagher-sentieon	INDEL	D1_5	*	hetalt	96.6974	93.9971	99.5574	61.8361	9630	615	9672	43	42	97.6744
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.1157	94.7910	99.5574	48.6452	5623	309	5623	25	23	92.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.7034	94.0086	99.5573	32.9140	7610	485	7646	34	34	100.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.1533	98.7528	99.5572	74.0073	1346	17	1349	6	1	16.6667
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.8156	94.2210	99.5572	26.7488	6701	411	6745	30	30	100.0000
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7413	99.9261	99.5572	74.4050	1352	1	1349	6	4	66.6667
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.8082	94.2070	99.5571	26.7517	6700	412	6744	30	30	100.0000
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7452	99.9341	99.5570	56.8831	6068	4	6068	27	27	100.0000
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7021	99.8478	99.5569	77.2437	656	1	674	3	3	100.0000
jlack-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	95.9102	92.5212	99.5569	59.5559	14264	1153	14381	64	58	90.6250
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.3600	95.2580	99.5569	48.5171	683	34	674	3	3	100.0000
jli-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	hetalt	90.6149	83.1470	99.5567	28.0153	1041	211	1123	5	5	100.0000
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4180	99.2798	99.5566	63.6361	11028	80	11002	49	18	36.7347
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.2454	98.9362	99.5565	60.8846	465	5	449	2	0	0.0000
hfeng-pmm1	SNP	tv	map_l100_m0_e0	*	99.3900	99.2241	99.5564	68.9143	10998	86	10997	49	15	30.6122
asubramanian-gatk	INDEL	D1_5	map_siren	homalt	97.6001	95.7192	99.5563	81.8284	1118	50	1122	5	3	60.0000
ckim-dragen	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5191	99.4821	99.5562	75.3624	48021	250	47785	213	116	54.4601
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.4368	99.3178	99.5561	50.0867	10336	71	10317	46	37	80.4348
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.5782	99.6004	99.5561	52.7078	2243	9	2243	10	0	0.0000
bgallagher-sentieon	SNP	ti	map_siren	*	99.6181	99.6801	99.5561	54.0168	100034	321	100019	446	66	14.7982
ndellapenna-hhga	SNP	tv	map_l150_m2_e1	het	98.5776	97.6184	99.5559	73.8732	7173	175	7173	32	13	40.6250
hfeng-pmm1	SNP	*	segdup	het	99.6248	99.6939	99.5558	89.5848	17264	53	17258	77	0	0.0000
ckim-gatk	INDEL	D1_5	*	hetalt	96.5155	93.6554	99.5558	62.7234	9595	650	9637	43	43	100.0000
mlin-fermikit	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.2029	96.8864	99.5557	62.5968	17021	547	17030	76	4	5.2632
ckim-vqsr	INDEL	D1_5	*	hetalt	96.5103	93.6457	99.5557	62.7258	9594	651	9636	43	43	100.0000
dgrover-gatk	INDEL	D1_5	map_l150_m1_e0	homalt	98.8962	98.2456	99.5556	87.8837	224	4	224	1	1	100.0000
ckim-isaac	INDEL	I1_5	segdup	homalt	97.0748	94.7146	99.5556	90.3516	448	25	448	2	2	100.0000
eyeh-varpipe	INDEL	*	func_cds	homalt	97.5248	95.5752	99.5556	29.9065	216	10	224	1	1	100.0000
asubramanian-gatk	INDEL	*	func_cds	homalt	99.3348	99.1150	99.5556	39.8396	224	2	224	1	1	100.0000
hfeng-pmm1	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	98.3628	97.1983	99.5556	70.8549	451	13	448	2	0	0.0000
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.0544	98.5583	99.5556	65.3417	30694	449	30694	137	9	6.5693
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.0544	98.5583	99.5556	65.3417	30694	449	30694	137	9	6.5693
rpoplin-dv42	INDEL	*	func_cds	homalt	99.3348	99.1150	99.5556	35.7143	224	2	224	1	1	100.0000
rpoplin-dv42	INDEL	D1_5	HG002compoundhet	hetalt	96.8685	94.3226	99.5556	55.8683	9636	580	9632	43	42	97.6744
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	98.8149	98.0851	99.5556	59.5687	461	9	448	2	1	50.0000
egarrison-hhga	SNP	ti	segdup	*	99.6343	99.7134	99.5554	88.9440	19481	56	19481	87	25	28.7356
eyeh-varpipe	SNP	ti	*	*	99.7598	99.9651	99.5553	19.0734	2084791	727	2061083	9206	307	3.3348
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.1845	96.8509	99.5553	39.7095	17684	575	17685	79	67	84.8101
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5044	99.4538	99.5551	80.0137	10742	59	10742	48	17	35.4167
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	95.4396	91.6508	99.5551	24.5986	6257	570	6265	28	25	89.2857
jli-custom	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3482	99.1423	99.5550	73.6647	47857	414	47648	213	149	69.9531
jli-custom	SNP	*	map_l125_m2_e0	*	99.3286	99.1032	99.5549	68.8474	46304	419	46301	207	67	32.3671
jli-custom	INDEL	*	*	homalt	99.7041	99.8538	99.5548	57.2311	124989	183	124999	559	535	95.7066

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