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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 387 388 389 390 391 392 393 394 395 ... 1720 1721 » 19501-19550 / 86044 show all
jmaeng-gatk	INDEL	*	HG002complexvar	homalt	99.7212	99.8779	99.5650	57.3567	26994	33	27007	118	111	94.0678
asubramanian-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.2022	98.8423	99.5649	69.6516	4781	56	4805	21	9	42.8571
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5323	99.5000	99.5646	79.8322	10747	54	10747	47	15	31.9149
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.4081	99.2523	99.5645	82.9173	4115	31	4115	18	8	44.4444
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.1075	96.6926	99.5645	63.4833	13302	455	13260	58	44	75.8621
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.1075	96.6926	99.5645	63.4833	13302	455	13260	58	44	75.8621
gduggal-bwavard	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.1182	98.6758	99.5645	45.6045	6185	83	6173	27	13	48.1481
ckim-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6452	99.7262	99.5644	75.3068	33145	91	33139	145	104	71.7241
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3750	99.1863	99.5644	51.3896	3657	30	3657	16	13	81.2500
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.9829	96.4509	99.5644	27.1624	5245	193	5257	23	22	95.6522
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3613	99.1592	99.5643	51.5120	3656	31	3656	16	13	81.2500
dgrover-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3506	99.1379	99.5643	72.3494	460	4	457	2	0	0.0000
ckim-dragen	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	het	98.8550	98.1557	99.5643	82.0071	479	9	457	2	0	0.0000
ltrigg-rtg1	INDEL	D1_5	map_l100_m1_e0	het	97.0745	94.7064	99.5641	73.0054	1145	64	1142	5	0	0.0000
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6000	99.6361	99.5640	74.0720	1369	5	1370	6	0	0.0000
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.9353	96.3590	99.5640	26.8986	5240	198	5252	23	22	95.6522
ndellapenna-hhga	SNP	*	segdup	homalt	99.7258	99.8883	99.5639	88.9154	10731	12	10731	47	47	100.0000
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	94.6842	90.2604	99.5639	40.3949	15078	1627	15298	67	60	89.5522
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	94.6842	90.2604	99.5639	40.3949	15078	1627	15298	67	60	89.5522
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.8625	98.1712	99.5636	45.3709	8213	153	8213	36	34	94.4444
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	98.0678	96.6163	99.5636	56.9165	1599	56	1597	7	5	71.4286
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.8203	96.1373	99.5633	75.6642	224	9	228	1	1	100.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3464	99.1304	99.5633	66.6181	228	2	228	1	1	100.0000
jlack-gatk	INDEL	*	map_siren	hetalt	95.3604	91.4980	99.5633	86.9812	226	21	228	1	0	0.0000
ckim-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2418	98.9224	99.5633	72.5090	459	5	456	2	0	0.0000
astatham-gatk	SNP	*	map_l150_m2_e1	het	86.2859	76.1332	99.5631	83.9622	15503	4860	15497	68	27	39.7059
hfeng-pmm3	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.8589	98.1645	99.5631	72.9590	47385	886	47175	207	154	74.3961
jli-custom	SNP	*	HG002compoundhet	het	99.6122	99.6614	99.5631	45.6634	14130	48	14128	62	24	38.7097
jlack-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.4903	99.4178	99.5630	74.2111	1366	8	1367	6	0	0.0000
dgrover-gatk	INDEL	D6_15	HG002compoundhet	hetalt	97.2251	94.9945	99.5630	24.6392	7743	408	7747	34	33	97.0588
hfeng-pmm3	SNP	tv	map_l125_m2_e0	*	99.5176	99.4724	99.5629	71.4177	16402	87	16400	72	10	13.8889
ltrigg-rtg2	SNP	tv	map_siren	het	99.1276	98.6962	99.5628	47.7162	28236	373	28241	124	4	3.2258
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4741	99.3855	99.5628	54.8644	6146	38	6148	27	9	33.3333
ckim-isaac	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	96.9784	94.5248	99.5628	57.7562	915	53	911	4	2	50.0000
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.2610	89.4954	99.5627	34.0219	12558	1474	12751	56	50	89.2857
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6651	99.7679	99.5625	58.6903	3869	9	3869	17	0	0.0000
astatham-gatk	INDEL	D6_15	HG002compoundhet	hetalt	97.1670	94.8841	99.5625	24.4483	7734	417	7738	34	33	97.0588
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.3976	99.2333	99.5624	89.0421	906	7	910	4	4	100.0000
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6714	99.7807	99.5624	68.6019	910	2	910	4	3	75.0000
rpoplin-dv42	SNP	tv	map_l250_m2_e0	homalt	98.3252	97.1185	99.5624	88.0052	910	27	910	4	4	100.0000
ckim-vqsr	SNP	*	segdup	*	98.8099	98.0689	99.5622	93.7251	27525	542	27519	121	12	9.9174
raldana-dualsentieon	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	98.7585	97.9680	99.5620	62.6286	3182	66	3182	14	0	0.0000
ltrigg-rtg2	INDEL	D1_5	segdup	het	99.2017	98.8439	99.5620	92.4343	684	8	682	3	0	0.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.6905	93.9802	99.5617	36.0300	7681	492	7723	34	34	100.0000
gduggal-bwaplat	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.0673	90.9611	99.5617	70.9107	1590	158	1590	7	6	85.7143
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.8596	98.1676	99.5615	75.0651	14304	267	14304	63	7	11.1111
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.8596	98.1676	99.5615	75.0651	14304	267	14304	63	7	11.1111
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.1571	94.8660	99.5615	32.7282	8814	477	8855	39	37	94.8718
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.1571	94.8660	99.5615	32.7282	8814	477	8855	39	37	94.8718
ckim-vqsr	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.2755	98.9912	99.5615	74.4850	63781	650	63794	281	255	90.7473

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