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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 386 387 388 389 390 391 392 393 394 ... 1720 1721 » 19451-19500 / 86044 show all
jlack-gatk	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	90.9909	83.7736	99.5690	47.3923	444	86	462	2	1	50.0000
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.0354	98.5075	99.5690	83.8609	462	7	462	2	2	100.0000
gduggal-bwavard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	93.7898	88.6447	99.5690	61.2364	484	62	462	2	2	100.0000
dgrover-gatk	SNP	ti	map_siren	het	99.5897	99.6105	99.5689	58.1271	62139	243	62130	269	51	18.9591
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4326	99.2967	99.5689	75.2558	5083	36	5081	22	10	45.4545
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.4185	93.4618	99.5685	26.7894	6647	465	6691	29	29	100.0000
ckim-isaac	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	96.9627	94.4899	99.5685	38.0503	3464	202	3461	15	9	60.0000
ltrigg-rtg2	INDEL	I1_5	HG002complexvar	het	99.3853	99.2028	99.5685	52.2881	18044	145	17305	75	44	58.6667
hfeng-pmm1	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	98.9986	98.4353	99.5683	42.5145	692	11	692	3	2	66.6667
gduggal-bwaplat	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	93.4144	87.9771	99.5680	73.7230	461	63	461	2	1	50.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6757	99.7835	99.5680	64.0528	461	1	461	2	2	100.0000
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.8351	98.1132	99.5677	73.2460	728	14	691	3	3	100.0000
jli-custom	INDEL	I1_5	map_l100_m2_e1	*	99.2452	98.9247	99.5677	82.8600	1380	15	1382	6	3	50.0000
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7474	99.9277	99.5677	58.0918	1382	1	1382	6	0	0.0000
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7293	99.8915	99.5676	76.0425	921	1	921	4	2	50.0000
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	97.8983	96.2840	99.5676	55.8569	5519	213	5527	24	18	75.0000
dgrover-gatk	SNP	tv	map_l250_m2_e0	homalt	98.9259	98.2924	99.5676	86.6638	921	16	921	4	3	75.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.8530	86.9868	99.5675	29.4261	1123	168	1151	5	5	100.0000
hfeng-pmm3	SNP	tv	map_l125_m2_e1	*	99.5225	99.4777	99.5673	71.4702	16570	87	16568	72	10	13.8889
hfeng-pmm3	INDEL	I1_5	map_siren	*	99.4006	99.2346	99.5672	79.0750	2982	23	2991	13	3	23.0769
dgrover-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6271	99.6871	99.5672	75.3638	33132	104	33126	144	110	76.3889
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4951	99.4232	99.5671	63.4301	1379	8	1380	6	2	33.3333
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	94.0695	89.1473	99.5671	45.7746	230	28	230	1	1	100.0000
jlack-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7831	100.0000	99.5671	71.3400	230	0	230	1	1	100.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	98.8539	98.1508	99.5671	42.1053	690	13	690	3	2	66.6667
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	98.0439	96.5665	99.5671	75.8368	225	8	230	1	1	100.0000
egarrison-hhga	SNP	*	map_l250_m2_e1	*	98.7184	97.8841	99.5670	88.3214	7818	169	7818	34	16	47.0588
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.4110	99.2557	99.5668	65.5731	4801	36	4827	21	3	14.2857
jli-custom	INDEL	D6_15	HG002compoundhet	hetalt	97.6428	95.7919	99.5667	24.6880	7808	343	7812	34	33	97.0588
hfeng-pmm1	SNP	*	map_l150_m1_e0	*	99.3336	99.1016	99.5666	73.6726	30334	275	30328	132	37	28.0303
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	98.7814	98.0085	99.5665	42.6678	689	14	689	3	2	66.6667
dgrover-gatk	INDEL	D1_5	segdup	het	99.4942	99.4220	99.5665	95.0932	688	4	689	3	0	0.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.7273	95.9551	99.5663	48.2367	21350	900	21351	93	82	88.1720
hfeng-pmm3	SNP	ti	map_l125_m1_e0	het	99.4436	99.3211	99.5663	71.0299	18142	124	18138	79	8	10.1266
rpoplin-dv42	SNP	tv	map_l250_m2_e1	homalt	98.2869	97.0402	99.5662	88.1078	918	28	918	4	4	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.7887	96.0736	99.5661	64.7766	8931	365	8950	39	38	97.4359
hfeng-pmm3	SNP	ti	map_l150_m0_e0	homalt	99.6199	99.6740	99.5658	75.7331	2752	9	2752	12	4	33.3333
hfeng-pmm1	SNP	ti	map_l150_m0_e0	homalt	99.6199	99.6740	99.5658	75.8370	2752	9	2752	12	4	33.3333
gduggal-snapfb	SNP	*	map_l150_m2_e1	homalt	97.2353	95.0114	99.5658	80.8094	11237	590	11237	49	20	40.8163
ltrigg-rtg2	INDEL	I6_15	HG002complexvar	hetalt	96.8057	94.1946	99.5656	57.9927	1152	71	1146	5	5	100.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.7196	86.7545	99.5656	30.9538	1120	171	1146	5	4	80.0000
astatham-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.7103	95.9230	99.5655	64.4709	8917	379	8936	39	38	97.4359
hfeng-pmm3	SNP	ti	map_l150_m2_e0	*	99.5024	99.4394	99.5655	75.5202	20397	115	20393	89	14	15.7303
jli-custom	INDEL	D1_5	segdup	het	99.4935	99.4220	99.5652	94.2192	688	4	687	3	0	0.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5652	99.5652	99.5652	67.4221	229	1	229	1	1	100.0000
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	98.0429	96.5665	99.5652	76.2642	225	8	229	1	1	100.0000
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	98.0429	96.5665	99.5652	76.4344	225	8	229	1	1	100.0000
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3492	99.1342	99.5652	27.5591	458	4	458	2	2	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.0053	96.4936	99.5651	50.8758	5724	208	5724	25	23	92.0000
hfeng-pmm3	SNP	ti	map_l150_m2_e1	*	99.5026	99.4402	99.5651	75.5918	20607	116	20603	90	14	15.5556

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