PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 385 386 387 388 389 390 391 392 393 ... 1720 1721 » 19401-19450 / 86044 show all
ckim-gatk	INDEL	D6_15	HG002compoundhet	hetalt	96.9335	94.4301	99.5733	24.1244	7697	454	7701	33	33	100.0000
ckim-vqsr	INDEL	D6_15	HG002compoundhet	hetalt	96.9271	94.4179	99.5733	24.1268	7696	455	7700	33	33	100.0000
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.3884	99.2047	99.5729	68.2811	1871	15	1865	8	7	87.5000
asubramanian-gatk	SNP	*	map_l150_m2_e0	het	43.4711	27.8051	99.5729	95.1282	5598	14535	5595	24	6	25.0000
qzeng-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5290	99.4853	99.5728	52.8503	10050	52	10023	43	23	53.4884
hfeng-pmm1	SNP	tv	map_l125_m1_e0	het	99.2869	99.0026	99.5728	70.2971	10025	101	10023	43	11	25.5814
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	95.6879	92.0949	99.5726	86.9710	1165	100	1165	5	3	60.0000
bgallagher-sentieon	INDEL	*	map_siren	hetalt	96.4527	93.5223	99.5726	86.1210	231	16	233	1	0	0.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.2540	95.0409	99.5726	63.0163	8835	461	8854	38	38	100.0000
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.5761	99.5795	99.5726	29.1625	1421	6	1398	6	2	33.3333
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4664	99.3603	99.5726	85.2133	466	3	466	2	2	100.0000
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	98.3578	97.1724	99.5724	43.1938	10791	314	10945	47	46	97.8723
ckim-gatk	INDEL	D1_5	map_siren	homalt	99.4864	99.4007	99.5723	81.4444	1161	7	1164	5	4	80.0000
jli-custom	INDEL	D1_5	map_siren	homalt	99.5293	99.4863	99.5723	80.0137	1162	6	1164	5	5	100.0000
ckim-vqsr	INDEL	D1_5	map_siren	homalt	99.4864	99.4007	99.5723	81.4444	1161	7	1164	5	4	80.0000
raldana-dualsentieon	SNP	tv	map_l250_m2_e0	homalt	99.4658	99.3597	99.5722	85.2640	931	6	931	4	2	50.0000
ltrigg-rtg2	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.0121	98.4584	99.5720	70.6731	92993	1456	93299	401	200	49.8753
astatham-gatk	SNP	tv	map_l125_m1_e0	het	86.0971	75.8345	99.5720	79.9490	7679	2447	7677	33	8	24.2424
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.0603	94.6723	99.5719	32.5070	8796	495	8838	38	37	97.3684
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.0603	94.6723	99.5719	32.5070	8796	495	8838	38	37	97.3684
dgrover-gatk	SNP	tv	map_l250_m2_e1	homalt	98.9362	98.3087	99.5717	86.7386	930	16	930	4	3	75.0000
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5315	99.4915	99.5716	59.7014	19761	101	19754	85	47	55.2941
ltrigg-rtg2	INDEL	I1_5	*	het	99.5106	99.4497	99.5716	56.0879	78606	435	77868	335	92	27.4627
jlack-gatk	SNP	ti	HG002compoundhet	*	99.6570	99.7425	99.5716	36.7466	17433	45	17431	75	22	29.3333
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.5313	97.5124	99.5716	47.3892	588	15	2789	12	10	83.3333
ndellapenna-hhga	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.2284	98.8877	99.5715	51.9423	27648	311	27655	119	75	63.0252
ckim-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.1124	94.7719	99.5714	64.0050	8810	486	8829	38	38	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.1068	94.7612	99.5714	64.0076	8809	487	8828	38	38	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l100_m2_e1	*	97.7413	95.9773	99.5713	78.2897	1861	78	1858	8	2	25.0000
jmaeng-gatk	INDEL	D1_5	map_siren	homalt	99.3571	99.1438	99.5712	81.3141	1158	10	1161	5	5	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	93.3378	87.8389	99.5712	29.6743	1134	157	1161	5	5	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	93.3378	87.8389	99.5712	29.6743	1134	157	1161	5	5	100.0000
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	97.0172	94.5909	99.5711	30.5429	13273	759	13466	58	56	96.5517
astatham-gatk	INDEL	I1_5	*	homalt	99.7125	99.8544	99.5710	55.1217	60340	88	60345	260	257	98.8462
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	97.0877	94.7254	99.5709	28.2155	13038	726	13226	57	56	98.2456
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.2867	99.0043	99.5708	47.6796	696	7	696	3	2	66.6667
jli-custom	SNP	tv	map_l250_m2_e0	homalt	99.3044	99.0395	99.5708	85.4375	928	9	928	4	4	100.0000
gduggal-bwavard	INDEL	D1_5	map_l150_m2_e1	homalt	97.5265	95.5645	99.5708	84.1389	237	11	232	1	1	100.0000
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4504	99.3304	99.5707	59.9377	19729	133	19713	85	64	75.2941
jmaeng-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.0103	94.5783	99.5706	64.1494	8792	504	8811	38	38	100.0000
ndellapenna-hhga	SNP	tv	map_l125_m0_e0	*	98.6916	97.8284	99.5702	72.2163	6487	144	6487	28	13	46.4286
raldana-dualsentieon	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.0349	98.5054	99.5702	72.8907	63468	963	63480	274	249	90.8759
astatham-gatk	SNP	*	map_l125_m0_e0	*	93.0056	87.2530	99.5702	78.3613	16914	2471	16911	73	29	39.7260
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5603	99.5507	99.5700	75.2360	5096	23	5094	22	10	45.4545
hfeng-pmm3	SNP	ti	map_l125_m2_e0	het	99.4510	99.3325	99.5698	72.2770	18750	126	18746	81	8	9.8765
jlack-gatk	INDEL	I16_PLUS	*	hetalt	92.9357	87.1306	99.5697	57.5280	1828	270	1851	8	7	87.5000
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	97.6055	95.7176	99.5693	26.7854	7823	350	7860	34	32	94.1176
hfeng-pmm3	SNP	ti	map_l125_m2_e1	het	99.4518	99.3346	99.5693	72.3168	18960	127	18956	82	8	9.7561
jmaeng-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5319	99.4945	99.5693	75.4597	33068	168	33062	143	107	74.8252
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.5907	97.6311	99.5693	27.5733	1154	28	1156	5	5	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge