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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
19351-19400 / 86044 show all
hfeng-pmm1INDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.5664
471247122
100.0000
jli-customINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.5135
471247122
100.0000
hfeng-pmm2INDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.4837
471247122
100.0000
hfeng-pmm3INDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.3820
471247122
100.0000
ckim-vqsrINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.8593
471247122
100.0000
dgrover-gatkINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.8776
471247122
100.0000
bgallagher-sentieonINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.7775
471247122
100.0000
astatham-gatkINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.7984
471247122
100.0000
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7012
99.8255
99.5772
47.7317
400474004170
0.0000
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.1330
96.7301
99.5772
56.3405
30381102730382129103
79.8450
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.1330
96.7301
99.5772
56.3405
30381102730382129103
79.8450
ckim-gatkINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.8593
471247122
100.0000
gduggal-bwavardSNPtisegduphomalt
98.7626
97.9614
99.5771
88.2815
735215373003130
96.7742
dgrover-gatkSNPtimap_l100_m2_e0*
99.5249
99.4730
99.5767
67.5957
487032584869620750
24.1546
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.3198
99.0645
99.5765
41.0214
211820211692
22.2222
jli-customSNP*map_sirenhet
99.5222
99.4681
99.5764
53.8949
905074849050138576
19.7403
ltrigg-rtg2INDEL*map_l150_m2_e0homalt
98.7417
97.9210
99.5763
84.9490
4711047021
50.0000
jlack-gatkINDELD1_5HG002complexvarhet
99.5570
99.5377
99.5763
55.9428
2066996206818829
32.9545
jlack-gatkINDELI1_5segduphomalt
99.4709
99.3658
99.5763
92.8690
470347022
100.0000
raldana-dualsentieonSNPtvmap_l250_m2_e1homalt
99.4709
99.3658
99.5763
85.3530
940694042
50.0000
asubramanian-gatkINDELI1_5*homalt
99.5606
99.5449
99.5763
55.0778
6015327560163256247
96.4844
gduggal-bwavardINDEL*HG002complexvarhomalt
95.0919
90.9942
99.5761
40.5691
2459324342395810266
64.7059
ltrigg-rtg1SNPtvmap_l125_m0_e0het
97.8147
96.1145
99.5761
59.9585
42301714228183
16.6667
cchapple-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.7070
97.8532
99.5759
69.9799
5971131117415042
84.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
99.4857
99.3958
99.5758
60.5358
164510164374
57.1429
qzeng-customSNPtimap_sirenhomalt
93.0187
87.2719
99.5758
47.6263
33090482632626139121
87.0504
hfeng-pmm3SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5901
97.6240
99.5756
74.7725
89162178916385
13.1579
hfeng-pmm3SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5901
97.6240
99.5756
74.7725
89162178916385
13.1579
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
99.4553
99.3353
99.5755
60.7194
164411164274
57.1429
asubramanian-gatkINDELI1_5segduphomalt
99.3644
99.1543
99.5754
92.7483
469446922
100.0000
ltrigg-rtg1INDELD1_5map_l125_m0_e0*
96.8948
94.3548
99.5754
80.7834
4682846921
50.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.6224
99.6697
99.5753
80.0565
42241442201810
55.5556
egarrison-hhgaSNP*HG002compoundhethet
98.5499
97.5455
99.5752
43.4625
13830348138305931
52.5424
rpoplin-dv42INDELD1_5**
99.4429
99.3110
99.5751
58.2332
1457341011145779622549
88.2637
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.3007
99.0279
99.5750
78.5377
10696105107774621
45.6522
jli-customSNPtvmap_l250_m2_e1homalt
99.3111
99.0486
99.5749
85.5298
937993744
100.0000
hfeng-pmm2SNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
96.9477
94.4556
99.5749
66.5601
9375593740
0.0000
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
93.7749
88.6135
99.5748
31.3084
1144147117155
100.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
99.3640
99.1541
99.5747
61.1334
164114163974
57.1429
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.9782
96.4324
99.5745
60.1289
810930081903513
37.1429
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.4610
97.3722
99.5745
76.8854
889324088933810
26.3158
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.4610
97.3722
99.5745
76.8854
889324088933810
26.3158
raldana-dualsentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0441
98.5197
99.5742
73.0561
3274449232737140116
82.8571
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
97.4672
95.4477
99.5740
49.7805
253712131556135135
100.0000
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
97.4933
95.4980
99.5739
64.9402
7003370133
100.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5462
99.5186
99.5739
79.3195
1074952107494613
28.2609
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.5789
99.5842
99.5736
56.7742
479246721
50.0000
astatham-gatkINDELD1_5map_sirenhomalt
99.6154
99.6575
99.5734
81.2660
11644116754
80.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7617
99.9506
99.5734
57.9016
6069360692625
96.1538
raldana-dualsentieonSNPtimap_siren*
99.5625
99.5516
99.5734
52.8084
999054509989042823
5.3738