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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 381 382 383 384 385 386 387 388 389 ... 1720 1721 » 19201-19250 / 86044 show all
ltrigg-rtg1	SNP	ti	segdup	homalt	99.7604	99.9334	99.5880	88.0751	7500	5	7494	31	31	100.0000
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.0802	98.5775	99.5880	67.8801	30700	443	30701	127	3	2.3622
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.0802	98.5775	99.5880	67.8801	30700	443	30701	127	3	2.3622
asubramanian-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.9354	98.2913	99.5879	51.8136	3624	63	3625	15	11	73.3333
jmaeng-gatk	INDEL	I1_5	map_siren	homalt	99.5051	99.4224	99.5878	78.4891	1205	7	1208	5	4	80.0000
asubramanian-gatk	SNP	tv	func_cds	*	99.5422	99.4967	99.5877	36.6971	4349	22	4348	18	0	0.0000
dgrover-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5152	99.4428	99.5877	78.3498	6068	34	6039	25	11	44.0000
ltrigg-rtg2	INDEL	*	map_l150_m2_e1	homalt	98.7709	97.9675	99.5876	84.9098	482	10	483	2	1	50.0000
ltrigg-rtg2	SNP	*	map_l250_m0_e0	*	94.8478	90.5386	99.5876	84.4949	1933	202	1932	8	3	37.5000
jli-custom	SNP	tv	func_cds	het	99.7746	99.9624	99.5876	29.8712	2656	1	2656	11	0	0.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.2807	95.0784	99.5875	32.3304	6491	336	6518	27	27	100.0000
hfeng-pmm3	SNP	tv	map_l100_m2_e0	het	99.5338	99.4803	99.5875	67.0941	15695	82	15691	65	5	7.6923
jlack-gatk	SNP	*	map_l250_m2_e1	homalt	98.6256	97.6821	99.5874	87.0236	2655	63	2655	11	8	72.7273
dgrover-gatk	INDEL	I1_5	*	homalt	99.7224	99.8577	99.5874	55.4630	60342	86	60347	250	246	98.4000
bgallagher-sentieon	INDEL	I1_5	*	*	99.4227	99.2586	99.5873	58.2134	149547	1117	149597	620	500	80.6452
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7244	99.8620	99.5872	63.6182	2171	3	2171	9	0	0.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.4722	93.5461	99.5872	27.3535	6711	463	6755	28	28	100.0000
rpoplin-dv42	INDEL	I1_5	map_siren	homalt	99.5047	99.4224	99.5871	77.9738	1205	7	1206	5	3	60.0000
jli-custom	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.4747	97.3872	99.5868	71.5695	15170	407	15184	63	47	74.6032
gduggal-bwavard	INDEL	D1_5	map_l100_m0_e0	homalt	97.6237	95.7364	99.5868	77.6133	247	11	241	1	1	100.0000
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	98.6694	97.7688	99.5868	58.0952	482	11	482	2	1	50.0000
gduggal-snapplat	SNP	*	map_l250_m0_e0	homalt	86.7142	76.7886	99.5868	94.0431	483	146	482	2	2	100.0000
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3797	99.1736	99.5868	69.7500	240	2	241	1	1	100.0000
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6624	99.7383	99.5867	60.0529	16386	43	16385	68	18	26.4706
jmaeng-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3667	99.1478	99.5866	78.9281	6050	52	6022	25	8	32.0000
gduggal-bwaplat	SNP	*	func_cds	het	99.4076	99.2295	99.5864	39.9773	11075	86	11075	46	4	8.6957
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.5658	99.5452	99.5863	69.3755	4815	22	4815	20	10	50.0000
jli-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.7232	99.8605	99.5863	54.2148	27920	39	27921	116	9	7.7586
bgallagher-sentieon	INDEL	D16_PLUS	HG002compoundhet	hetalt	96.6214	93.8278	99.5863	26.4359	1809	119	1926	8	8	100.0000
cchapple-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.6177	99.6495	99.5860	52.1198	27861	98	27903	116	33	28.4483
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	98.3558	97.1558	99.5859	47.3310	10111	296	10101	42	37	88.0952
hfeng-pmm1	SNP	tv	map_l125_m2_e0	het	99.3085	99.0328	99.5858	71.6339	10341	101	10339	43	11	25.5814
astatham-gatk	SNP	tv	map_l125_m2_e0	het	86.2155	76.0103	99.5858	81.0010	7937	2505	7935	33	8	24.2424
raldana-dualsentieon	INDEL	*	*	het	99.3035	99.0228	99.5858	57.9096	192236	1897	191867	798	611	76.5664
ckim-gatk	SNP	tv	*	het	99.5973	99.6088	99.5858	30.9441	589381	2315	589308	2451	61	2.4888
ckim-dragen	INDEL	D1_5	HG002compoundhet	hetalt	96.7587	94.0877	99.5857	56.9377	9612	604	9615	40	40	100.0000
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.2933	93.2116	99.5857	27.6338	6687	487	6731	28	28	100.0000
jmaeng-gatk	INDEL	I1_5	*	homalt	99.7149	99.8444	99.5857	55.4032	60334	94	60340	251	245	97.6096
hfeng-pmm3	SNP	tv	map_l100_m2_e1	het	99.5354	99.4855	99.5854	67.1367	15856	82	15852	66	5	7.5758
hfeng-pmm2	INDEL	D1_5	map_l150_m2_e0	homalt	99.3789	99.1736	99.5851	87.0500	240	2	240	1	1	100.0000
asubramanian-gatk	INDEL	*	map_l125_m2_e1	homalt	96.1924	93.0233	99.5851	87.7995	720	54	720	3	1	33.3333
bgallagher-sentieon	INDEL	D1_5	map_l150_m2_e0	homalt	99.3789	99.1736	99.5851	88.1105	240	2	240	1	1	100.0000
astatham-gatk	INDEL	D1_5	map_l150_m2_e0	homalt	99.3789	99.1736	99.5851	88.2324	240	2	240	1	1	100.0000
egarrison-hhga	SNP	tv	map_l125_m0_e0	het	98.8440	98.1141	99.5849	74.9393	4318	83	4318	18	7	38.8889
astatham-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5983	99.6119	99.5848	74.9525	33107	129	33101	138	106	76.8116
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7574	99.9306	99.5848	69.2619	1439	1	1439	6	0	0.0000
ltrigg-rtg1	INDEL	*	HG002complexvar	het	98.9136	98.2515	99.5847	53.0906	45404	808	44604	186	79	42.4731
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1148	98.6494	99.5846	73.9124	1680	23	1678	7	2	28.5714
hfeng-pmm3	INDEL	D16_PLUS	*	homalt	99.3781	99.1726	99.5846	66.6072	1678	14	1678	7	4	57.1429
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1148	98.6494	99.5846	74.0889	1680	23	1678	7	1	14.2857

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