PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19151-19200 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | het | 97.2316 | 94.9807 | 99.5918 | 74.1652 | 738 | 39 | 732 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.9858 | 98.3871 | 99.5918 | 87.4101 | 244 | 4 | 244 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m2_e0 | * | 54.0835 | 37.1211 | 99.5918 | 97.3661 | 2927 | 4958 | 2928 | 12 | 3 | 25.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 93.8172 | 88.6758 | 99.5914 | 32.3428 | 1942 | 248 | 1950 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | HG002complexvar | * | 98.8636 | 98.1465 | 99.5912 | 55.0476 | 75511 | 1426 | 75278 | 309 | 190 | 61.4887 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.5554 | 99.5199 | 99.5910 | 69.5435 | 19485 | 94 | 19481 | 80 | 32 | 40.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.5554 | 99.5199 | 99.5910 | 69.5435 | 19485 | 94 | 19481 | 80 | 32 | 40.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m1_e0 | homalt | 96.4155 | 93.4363 | 99.5910 | 81.7265 | 484 | 34 | 487 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | SNP | tv | func_cds | homalt | 99.7950 | 100.0000 | 99.5909 | 28.7083 | 1704 | 0 | 1704 | 7 | 5 | 71.4286 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3201 | 99.0507 | 99.5909 | 51.8830 | 3652 | 35 | 3652 | 15 | 12 | 80.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2927 | 98.9965 | 99.5907 | 51.8966 | 3650 | 37 | 3650 | 15 | 12 | 80.0000 | |
| dgrover-gatk | INDEL | D1_5 | HG002compoundhet | hetalt | 97.3579 | 95.2232 | 99.5905 | 58.8743 | 9728 | 488 | 9729 | 40 | 39 | 97.5000 | |
| dgrover-gatk | INDEL | D16_PLUS | HG002compoundhet | hetalt | 97.0887 | 94.7095 | 99.5904 | 26.5237 | 1826 | 102 | 1945 | 8 | 8 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.8866 | 96.2401 | 99.5904 | 67.7099 | 1459 | 57 | 1459 | 6 | 1 | 16.6667 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.7368 | 90.3346 | 99.5902 | 76.0314 | 243 | 26 | 243 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | map_l125_m2_e1 | het | 99.3110 | 99.0335 | 99.5902 | 71.6922 | 10451 | 102 | 10449 | 43 | 11 | 25.5814 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m0_e0 | het | 85.2632 | 74.5399 | 99.5902 | 88.6512 | 243 | 83 | 243 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 57.3427 | 40.2628 | 99.5902 | 49.2196 | 521 | 773 | 486 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.5752 | 97.5806 | 99.5902 | 82.7562 | 242 | 6 | 243 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | tv | map_l125_m2_e1 | het | 86.2148 | 76.0068 | 99.5902 | 81.0461 | 8021 | 2532 | 8019 | 33 | 8 | 24.2424 | |
| egarrison-hhga | SNP | * | map_l150_m0_e0 | het | 98.7297 | 97.8841 | 99.5900 | 80.6088 | 7772 | 168 | 7772 | 32 | 11 | 34.3750 | |
| hfeng-pmm3 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.0815 | 96.6180 | 99.5899 | 68.7793 | 2914 | 102 | 2914 | 12 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_siren | homalt | 99.7534 | 99.9175 | 99.5898 | 76.7011 | 1211 | 1 | 1214 | 5 | 3 | 60.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7781 | 99.9671 | 99.5898 | 57.9684 | 6070 | 2 | 6070 | 25 | 24 | 96.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7781 | 99.9671 | 99.5898 | 57.9481 | 6070 | 2 | 6070 | 25 | 24 | 96.0000 | |
| astatham-gatk | INDEL | D1_5 | HG002compoundhet | hetalt | 97.2654 | 95.0470 | 99.5898 | 58.5927 | 9710 | 506 | 9711 | 40 | 39 | 97.5000 | |
| astatham-gatk | INDEL | D16_PLUS | HG002compoundhet | hetalt | 97.0065 | 94.5539 | 99.5897 | 26.4429 | 1823 | 105 | 1942 | 8 | 8 | 100.0000 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5350 | 99.4806 | 99.5894 | 54.0098 | 3639 | 19 | 3638 | 15 | 5 | 33.3333 | |
| ckim-vqsr | SNP | tv | HG002compoundhet | het | 99.1184 | 98.6518 | 99.5894 | 55.9836 | 4610 | 63 | 4608 | 19 | 12 | 63.1579 | |
| gduggal-bwaplat | SNP | tv | map_l250_m2_e0 | * | 50.3112 | 33.6572 | 99.5893 | 97.7433 | 970 | 1912 | 970 | 4 | 1 | 25.0000 | |
| astatham-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.6775 | 97.7823 | 99.5893 | 70.8819 | 970 | 22 | 970 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.7692 | 97.9625 | 99.5893 | 34.5018 | 24040 | 500 | 24005 | 99 | 66 | 66.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | map_siren | homalt | 99.6707 | 99.7525 | 99.5892 | 76.9508 | 1209 | 3 | 1212 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.2625 | 98.9379 | 99.5892 | 62.6573 | 1211 | 13 | 1212 | 5 | 5 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | HG002compoundhet | hetalt | 96.8969 | 94.3465 | 99.5891 | 25.8850 | 1819 | 109 | 1939 | 8 | 8 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | HG002compoundhet | hetalt | 96.8969 | 94.3465 | 99.5891 | 25.8850 | 1819 | 109 | 1939 | 8 | 8 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | * | homalt | 99.7099 | 99.8312 | 99.5890 | 55.2277 | 60326 | 102 | 60332 | 249 | 247 | 99.1968 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7261 | 99.8636 | 99.5890 | 49.1643 | 1464 | 2 | 1454 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.9266 | 94.4029 | 99.5890 | 36.4317 | 15770 | 935 | 15992 | 66 | 64 | 96.9697 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.9266 | 94.4029 | 99.5890 | 36.4317 | 15770 | 935 | 15992 | 66 | 64 | 96.9697 | |
| hfeng-pmm1 | INDEL | * | * | homalt | 99.6836 | 99.7787 | 99.5886 | 55.4406 | 124895 | 277 | 124903 | 516 | 501 | 97.0930 | |
| egarrison-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.2210 | 98.8562 | 99.5885 | 62.9799 | 1210 | 14 | 1210 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 90.6252 | 83.1422 | 99.5885 | 23.9833 | 725 | 147 | 726 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.5935 | 97.6182 | 99.5885 | 50.6933 | 2910 | 71 | 2904 | 12 | 8 | 66.6667 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.5437 | 97.5207 | 99.5885 | 68.2768 | 236 | 6 | 242 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7938 | 100.0000 | 99.5885 | 64.0133 | 968 | 0 | 968 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | SNP | tv | map_siren | homalt | 98.9049 | 98.2309 | 99.5884 | 65.8705 | 16935 | 305 | 16935 | 70 | 12 | 17.1429 | |
| ndellapenna-hhga | SNP | ti | segdup | homalt | 99.7406 | 99.8934 | 99.5882 | 88.2312 | 7497 | 8 | 7497 | 31 | 31 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | segdup | homalt | 99.7804 | 99.9734 | 99.5881 | 87.6176 | 7503 | 2 | 7496 | 31 | 31 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_siren | homalt | 99.5465 | 99.5050 | 99.5881 | 78.6343 | 1206 | 6 | 1209 | 5 | 3 | 60.0000 | |