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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 378 379 380 381 382 383 384 385 386 ... 1720 1721 » 19051-19100 / 86044 show all
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5010	99.4006	99.6016	52.3483	25207	152	26749	107	95	88.7850
gduggal-bwaplat	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	88.6525	79.8722	99.6016	46.2527	250	63	250	1	1	100.0000
jli-custom	INDEL	I1_5	map_l125_m2_e1	het	98.9102	98.2283	99.6016	86.3661	499	9	500	2	0	0.0000
hfeng-pmm1	SNP	*	map_l125_m2_e0	het	99.2641	98.9290	99.6016	71.5339	29004	314	28998	116	29	25.0000
astatham-gatk	SNP	ti	map_l150_m2_e0	het	86.0268	75.7084	99.6015	83.8910	9752	3129	9748	39	19	48.7179
rpoplin-dv42	INDEL	D1_5	HG002complexvar	*	99.3660	99.1319	99.6013	57.4494	32431	284	32474	130	115	88.4615
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.7497	95.9658	99.6012	27.0945	10657	448	10739	43	42	97.6744
jli-custom	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.1334	94.7850	99.6011	59.6178	14613	804	14733	59	58	98.3051
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1719	98.7467	99.6008	69.5995	1497	19	1497	6	2	33.3333
qzeng-custom	SNP	ti	func_cds	het	99.7296	99.8589	99.6007	30.7386	8492	12	8481	34	1	2.9412
astatham-gatk	SNP	*	map_l100_m0_e0	het	88.7308	80.0000	99.6007	77.5238	16964	4241	16960	68	23	33.8235
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7799	99.9599	99.6005	62.1560	2493	1	2493	10	0	0.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6691	99.7378	99.6004	35.1764	7228	19	7228	29	28	96.5517
jmaeng-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1051	98.6148	99.6003	69.7196	1495	21	1495	6	3	50.0000
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.5167	99.4332	99.6003	68.5145	4737	27	4735	19	7	36.8421
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.9076	98.2249	99.6000	84.9034	498	9	498	2	2	100.0000
asubramanian-gatk	INDEL	I1_5	map_l100_m2_e0	homalt	96.4050	93.4087	99.6000	83.0048	496	35	498	2	2	100.0000
egarrison-hhga	SNP	ti	map_l250_m1_e0	*	98.7333	97.8816	99.6000	88.1610	4482	97	4482	18	8	44.4444
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.1434	98.6909	99.6000	82.9235	2337	31	2241	9	0	0.0000
mlin-fermikit	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.7510	97.9167	99.5997	47.1770	2491	53	2488	10	1	10.0000
hfeng-pmm3	SNP	ti	map_l100_m0_e0	*	99.5150	99.4304	99.5997	67.5390	21647	124	21644	87	13	14.9425
egarrison-hhga	SNP	tv	segdup	homalt	99.7379	99.8765	99.5996	90.3915	3234	4	3234	13	13	100.0000
ckim-dragen	SNP	ti	map_l150_m0_e0	homalt	99.3100	99.0221	99.5996	68.7592	2734	27	2736	11	10	90.9091
ltrigg-rtg1	SNP	tv	map_l100_m2_e1	het	98.9548	98.3185	99.5995	57.2767	15670	268	15666	63	5	7.9365
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.6474	95.7705	99.5993	26.2869	5208	230	5220	21	21	100.0000
ltrigg-rtg1	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	95.1777	91.1321	99.5992	56.5331	483	47	497	2	2	100.0000
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	91.7821	85.1027	99.5992	26.0741	497	87	497	2	2	100.0000
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5829	99.5667	99.5991	76.3025	2987	13	2981	12	4	33.3333
gduggal-bwaplat	SNP	ti	map_l250_m2_e1	*	56.1811	39.1253	99.5990	97.1464	1986	3090	1987	8	2	25.0000
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.9507	98.3108	99.5989	82.2763	2328	40	2235	9	0	0.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.6877	99.7767	99.5988	53.6597	6701	15	6703	27	8	29.6296
gduggal-snapfb	SNP	*	*	homalt	99.6988	99.7992	99.5986	21.4529	1177792	2370	1177860	4747	451	9.5007
gduggal-bwaplat	SNP	*	map_l250_m2_e1	*	54.2324	37.2605	99.5985	97.3745	2976	5011	2977	12	3	25.0000
gduggal-bwaplat	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	63.8458	46.9811	99.5984	65.4167	249	281	248	1	1	100.0000
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.1002	98.6070	99.5984	66.0300	991	14	992	4	3	75.0000
ndellapenna-hhga	INDEL	I1_5	*	homalt	99.4589	99.3199	99.5983	51.5644	60017	411	60008	242	186	76.8595
ltrigg-rtg2	SNP	tv	map_l100_m2_e1	het	98.8079	98.0299	99.5983	53.4836	15624	314	15620	63	2	3.1746
hfeng-pmm1	SNP	ti	map_l150_m2_e0	*	99.3647	99.1322	99.5983	75.0541	20334	178	20330	82	23	28.0488
jli-custom	INDEL	I1_5	map_siren	*	99.2153	98.8353	99.5983	78.8156	2970	35	2975	12	4	33.3333
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.5129	95.5131	99.5982	26.1932	5194	244	5206	21	21	100.0000
hfeng-pmm2	SNP	*	map_l125_m0_e0	homalt	99.6276	99.6573	99.5980	70.8911	6689	23	6689	27	10	37.0370
gduggal-bwafb	SNP	tv	*	*	99.7254	99.8534	99.5978	25.3671	968276	1422	968379	3911	282	7.2104
gduggal-bwaplat	SNP	tv	map_l250_m2_e1	*	50.6394	33.9506	99.5976	97.7410	990	1926	990	4	1	25.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.9992	98.4080	99.5976	63.6430	989	16	990	4	3	75.0000
hfeng-pmm1	SNP	ti	map_l150_m2_e1	*	99.3663	99.1362	99.5975	75.1263	20544	179	20540	83	23	27.7108
ltrigg-rtg2	SNP	tv	map_l250_m0_e0	het	92.6096	86.5385	99.5968	76.3020	495	77	494	2	0	0.0000
hfeng-pmm3	SNP	ti	segdup	*	99.7137	99.8311	99.5965	88.9183	19504	33	19502	79	3	3.7975
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.8473	98.1095	99.5964	63.8980	986	19	987	4	3	75.0000
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.4949	86.3386	99.5964	37.6133	2351	372	2468	10	10	100.0000
gduggal-bwavard	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	76.6857	62.3443	99.5964	36.2241	6457	3900	6416	26	21	80.7692

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