PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 377 378 379 380 381 382 383 384 385 ... 1720 1721 » 19001-19050 / 86044 show all
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.4780	95.4382	99.6070	47.2963	21235	1015	21290	84	55	65.4762
jlack-gatk	INDEL	I6_15	HG002complexvar	het	98.9714	98.3439	99.6068	59.5940	2316	39	2280	9	8	88.8889
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5478	99.4890	99.6066	49.0683	2531	13	2532	10	2	20.0000
jlack-gatk	INDEL	D1_5	map_l100_m0_e0	homalt	98.8281	98.0620	99.6063	82.5669	253	5	253	1	1	100.0000
ltrigg-rtg1	SNP	tv	map_l250_m0_e0	het	93.8017	88.6364	99.6063	81.4936	507	65	506	2	0	0.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	96.7495	94.0520	99.6063	76.6972	253	16	253	1	0	0.0000
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.8059	94.1587	99.6062	31.3760	12960	804	13154	52	51	98.0769
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7781	99.9506	99.6061	57.9561	6069	3	6069	24	23	95.8333
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2708	98.9378	99.6061	37.1789	10618	114	10620	42	29	69.0476
ltrigg-rtg1	INDEL	D1_5	map_l100_m1_e0	*	97.7114	95.8874	99.6061	77.1094	1772	76	1770	7	2	28.5714
ckim-dragen	INDEL	D6_15	HG002complexvar	het	99.2569	98.9103	99.6060	59.0976	3086	34	3034	12	10	83.3333
bgallagher-sentieon	INDEL	D1_5	HG002compoundhet	hetalt	96.7320	94.0192	99.6060	57.1663	9605	611	9606	38	38	100.0000
asubramanian-gatk	SNP	ti	map_l250_m2_e0	*	33.5713	20.1877	99.6059	98.2299	1011	3997	1011	4	1	25.0000
gduggal-bwaplat	INDEL	*	map_l100_m1_e0	homalt	76.2575	61.7767	99.6058	88.2125	758	469	758	3	2	66.6667
astatham-gatk	SNP	ti	map_l150_m2_e1	het	86.0111	75.6819	99.6055	83.9600	9850	3165	9846	39	19	48.7179
hfeng-pmm1	SNP	*	map_l100_m0_e0	*	99.3989	99.1931	99.6055	67.8013	32576	265	32572	129	37	28.6822
jpowers-varprowl	SNP	ti	*	*	99.5767	99.5483	99.6052	21.1558	2076086	9421	2076295	8230	1307	15.8809
gduggal-snapvard	SNP	ti	map_l100_m0_e0	homalt	97.3605	95.2148	99.6052	63.3538	7402	372	7316	29	23	79.3103
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.7110	86.7096	99.6050	29.5781	1481	227	1513	6	6	100.0000
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2155	98.8292	99.6047	53.9964	17642	209	17640	70	27	38.5714
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.2945	95.0894	99.6044	78.8532	6545	338	6546	26	3	11.5385
ckim-isaac	SNP	*	map_l150_m1_e0	het	73.7957	58.6094	99.6041	78.9632	11321	7995	11322	45	8	17.7778
gduggal-snapvard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	98.7471	97.9048	99.6040	63.8511	514	11	503	2	1	50.0000
gduggal-bwavard	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	98.0609	96.5649	99.6040	59.4051	506	18	503	2	2	100.0000
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6891	99.7744	99.6038	58.0494	11059	25	11062	44	20	45.4545
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.4856	99.3676	99.6038	88.3504	1257	8	1257	5	5	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4739	99.3445	99.6037	78.1364	6062	40	6032	24	14	58.3333
ckim-isaac	SNP	*	map_l150_m2_e1	het	74.2817	59.2251	99.6036	80.2344	12060	8303	12061	48	9	18.7500
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.2324	94.9716	99.6035	82.0153	2512	133	2512	10	3	30.0000
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.4458	99.2885	99.6035	87.7940	1256	9	1256	5	5	100.0000
jli-custom	SNP	ti	map_siren	het	99.5420	99.4806	99.6035	52.5864	62058	324	62054	247	50	20.2429
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4872	99.3714	99.6033	48.0102	4268	27	4268	17	0	0.0000
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	98.5655	97.5492	99.6032	43.6746	2229	56	2510	10	3	30.0000
ltrigg-rtg2	INDEL	D1_5	map_l100_m0_e0	homalt	98.6294	97.6744	99.6032	75.2456	252	6	251	1	1	100.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4637	99.3248	99.6031	48.7496	4266	29	4266	17	2	11.7647
gduggal-snapfb	SNP	ti	HG002complexvar	homalt	99.6542	99.7054	99.6030	19.3776	192894	570	192940	769	240	31.2094
hfeng-pmm1	SNP	ti	map_l125_m1_e0	het	99.2306	98.8613	99.6028	70.2477	18058	208	18054	72	18	25.0000
hfeng-pmm1	SNP	tv	segdup	het	99.6406	99.6785	99.6028	90.6534	5270	17	5266	21	0	0.0000
hfeng-pmm1	SNP	*	map_l125_m2_e1	het	99.2688	98.9372	99.6025	71.5784	29325	315	29319	117	29	24.7863
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	97.0455	94.6164	99.6025	28.0867	7733	440	7768	31	29	93.5484
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.3262	99.0514	99.6025	88.3465	1253	12	1253	5	5	100.0000
gduggal-bwafb	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	96.3560	93.3144	99.6025	30.4588	656	47	1253	5	4	80.0000
asubramanian-gatk	SNP	tv	map_l250_m2_e1	*	29.3068	17.1811	99.6024	98.5560	501	2415	501	2	0	0.0000
ltrigg-rtg1	SNP	ti	func_cds	*	99.7465	99.8912	99.6022	21.3270	13772	15	13771	55	1	1.8182
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7261	99.8504	99.6021	48.7836	4005	6	4005	16	1	6.2500
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	90.9027	83.6009	99.6021	25.4941	729	143	751	3	3	100.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7261	99.8504	99.6021	49.5356	4005	6	4005	16	2	12.5000
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5522	99.5025	99.6020	65.6057	1000	5	1001	4	3	75.0000
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.3053	99.0106	99.6019	68.7862	1501	15	1501	6	1	16.6667
asubramanian-gatk	INDEL	D1_5	*	*	99.2637	98.9281	99.6016	61.0980	145172	1573	145253	581	383	65.9208

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge