PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 376 377 378 379 380 381 382 383 384 ... 1720 1721 » 18951-19000 / 86044 show all
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3239	99.0379	99.6116	52.2441	27690	269	27695	108	53	49.0741
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5288	99.4462	99.6115	59.5139	19752	110	19745	77	49	63.6364
ltrigg-rtg1	SNP	*	map_siren	het	99.2561	98.9032	99.6115	48.6936	89992	998	89996	351	16	4.5584
jli-custom	SNP	ti	map_l125_m2_e0	*	99.3639	99.1176	99.6114	68.7298	29991	267	29989	117	41	35.0427
ltrigg-rtg2	INDEL	D1_5	*	het	99.5293	99.4473	99.6114	53.9225	87090	484	86889	339	71	20.9440
raldana-dualsentieon	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0144	98.4246	99.6113	60.1683	34861	558	34851	136	14	10.2941
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.2739	96.9720	99.6112	61.8511	1281	40	1281	5	3	60.0000
ghariani-varprowl	SNP	*	map_siren	homalt	99.5027	99.3944	99.6112	54.3239	54822	334	54823	214	127	59.3458
hfeng-pmm1	INDEL	D1_5	map_l100_m0_e0	homalt	99.4175	99.2248	99.6109	81.1722	256	2	256	1	1	100.0000
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.4175	99.2248	99.6109	65.3171	256	2	256	1	0	0.0000
ltrigg-rtg1	INDEL	D1_5	map_l100_m0_e0	homalt	99.6116	99.6124	99.6109	81.3091	257	1	256	1	1	100.0000
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.9440	94.4163	99.6108	25.7275	7643	452	7678	30	29	96.6667
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.1325	96.6975	99.6107	39.2966	17656	603	17657	69	63	91.3043
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.7796	97.9625	99.6105	70.5385	28127	585	28128	110	10	9.0909
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.7796	97.9625	99.6105	70.5385	28127	585	28128	110	10	9.0909
jmaeng-gatk	INDEL	*	HG002complexvar	*	99.2404	98.8731	99.6104	58.2744	76071	867	75939	297	248	83.5017
dgrover-gatk	SNP	tv	map_siren	*	99.6255	99.6408	99.6103	59.7727	45765	165	45757	179	35	19.5531
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.7467	97.8979	99.6103	71.3232	1304	28	1278	5	4	80.0000
hfeng-pmm1	SNP	ti	map_l125_m2_e0	het	99.2396	98.8716	99.6103	71.4782	18663	213	18659	73	18	24.6575
hfeng-pmm2	INDEL	*	*	*	99.3119	99.0152	99.6103	57.8578	341149	3393	341015	1334	1012	75.8621
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5131	99.4163	99.6101	78.2596	1533	9	1533	6	5	83.3333
ltrigg-rtg2	INDEL	I1_5	map_l100_m1_e0	homalt	99.3216	99.0347	99.6101	75.9719	513	5	511	2	1	50.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	98.8632	98.1277	99.6099	65.9765	3826	73	3830	15	10	66.6667
gduggal-bwavard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	54.8776	37.8708	99.6098	30.9469	1800	2953	1787	7	7	100.0000
ndellapenna-hhga	SNP	*	map_l150_m0_e0	*	98.5596	97.5316	99.6095	77.4194	11735	297	11735	46	22	47.8261
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.0261	98.4496	99.6094	60.3101	254	4	255	1	1	100.0000
hfeng-pmm1	SNP	ti	map_l125_m2_e1	het	99.2454	98.8841	99.6094	71.5149	18874	213	18870	74	18	24.3243
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.2218	98.8372	99.6094	61.6766	255	3	255	1	1	100.0000
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	83.4117	71.7452	99.6094	51.7891	259	102	255	1	1	100.0000
gduggal-bwafb	INDEL	D1_5	map_l100_m0_e0	homalt	99.2218	98.8372	99.6094	86.6736	255	3	255	1	1	100.0000
egarrison-hhga	INDEL	D1_5	map_l100_m0_e0	homalt	99.2218	98.8372	99.6094	84.1584	255	3	255	1	1	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5944	99.5794	99.6093	76.9540	6629	28	6629	26	6	23.0769
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	97.7777	96.0123	99.6093	42.4195	9992	415	9942	39	16	41.0256
gduggal-snapvard	SNP	ti	func_cds	het	99.3512	99.0945	99.6092	31.0131	8427	77	8411	33	13	39.3939
astatham-gatk	SNP	tv	map_l100_m0_e0	*	93.1039	87.3962	99.6092	73.8497	9687	1397	9686	38	11	28.9474
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5642	99.5193	99.6091	77.5046	6625	32	6625	26	8	30.7692
ltrigg-rtg2	SNP	*	HG002compoundhet	het	99.2921	98.9773	99.6090	42.0270	14033	145	14011	55	13	23.6364
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5798	99.5507	99.6089	75.0780	5096	23	5094	20	10	50.0000
cchapple-custom	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.2714	98.9362	99.6089	56.7644	465	5	764	3	2	66.6667
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.1540	92.9308	99.6088	28.2869	12791	973	12985	51	51	100.0000
ckim-dragen	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.2357	94.9731	99.6087	58.9389	14642	775	14763	58	58	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.1462	92.9163	99.6087	28.2901	12789	975	12983	51	51	100.0000
gduggal-bwaplat	INDEL	D6_15	HG002compoundhet	hetalt	83.4699	71.8317	99.6086	36.1235	5855	2296	5853	23	22	95.6522
gduggal-bwavard	SNP	*	*	*	99.3249	99.0431	99.6083	22.9016	3025405	29229	3004827	11817	3477	29.4237
gduggal-bwafb	SNP	ti	*	het	99.7363	99.8649	99.6080	22.2231	1280165	1732	1280284	5038	382	7.5824
ltrigg-rtg1	SNP	tv	HG002compoundhet	het	98.8241	98.0526	99.6078	50.3515	4582	91	4572	18	4	22.2222
hfeng-pmm3	INDEL	*	*	homalt	99.7023	99.7971	99.6077	55.0410	124918	254	124928	492	475	96.5447
ckim-isaac	SNP	*	map_l150_m2_e0	het	74.2562	59.1914	99.6072	80.1907	11917	8216	11918	47	8	17.0213
ckim-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.6801	99.7532	99.6071	56.0538	27890	69	27889	110	11	10.0000
asubramanian-gatk	INDEL	I1_5	map_l100_m2_e1	homalt	96.4668	93.5185	99.6071	83.0446	505	35	507	2	2	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge