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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
18851-18900 / 86044 show all
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1302
92.8764
99.6203
36.5800
155151190157436060
100.0000
eyeh-varpipeSNPtvmap_l150_m0_e0homalt
99.5466
99.4729
99.6203
81.0066
13217131251
20.0000
ltrigg-rtg1SNPtvmap_l250_m2_e1het
96.5098
93.5878
99.6202
78.7624
1839126183672
28.5714
jli-customSNP*map_l100_m2_e1*
99.4761
99.3323
99.6202
63.1271
742384997423528379
27.9152
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.7691
99.9184
99.6202
33.3544
734967345283
10.7143
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.7466
99.8734
99.6200
55.6834
15782157361
16.6667
ghariani-varprowlSNP**homalt
99.7891
99.9588
99.6200
19.7823
1179670486117979245002208
49.0667
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.4350
99.2509
99.6198
57.2358
265226210
0.0000
ltrigg-rtg2INDELI1_5map_l100_m2_e0homalt
99.3383
99.0584
99.6198
77.9732
526552421
50.0000
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.4350
99.2509
99.6198
58.8419
265226210
0.0000
gduggal-bwaplatINDEL*map_l100_m2_e0homalt
76.6829
62.3315
99.6198
88.8339
78647578632
66.6667
ltrigg-rtg1INDELD1_5map_l100_m2_e0*
97.7384
95.9269
99.6196
78.1861
183778183372
28.5714
egarrison-hhgaSNPtimap_l250_m2_e1*
98.8083
98.0102
99.6195
88.7052
49751014975199
47.3684
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4808
99.3427
99.6193
80.0419
1073071107304117
41.4634
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.5351
99.4510
99.6193
87.6224
235513235599
100.0000
jmaeng-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.2415
98.8665
99.6193
67.1895
4710544710185
27.7778
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.6017
95.6643
99.6192
25.0742
653129665402524
96.0000
jmaeng-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.6504
99.6818
99.6191
61.4842
554541775544321223
10.8491
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.3255
93.2427
99.6191
24.9186
754854775852929
100.0000
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.6190
99.6190
99.6190
68.6754
523252321
50.0000
jli-customSNP*map_l100_m2_e0*
99.4726
99.3267
99.6190
63.1033
734664987346328179
28.1139
ltrigg-rtg2SNP*map_l250_m0_e0het
92.7987
86.8526
99.6189
78.5270
1308198130750
0.0000
ckim-dragenINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
99.5712
99.5238
99.6187
62.3069
10455104544
100.0000
gduggal-snapplatSNP*func_cds*
99.4703
99.3223
99.6187
31.7106
1802712318027695
7.2464
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
99.5235
99.4286
99.6187
61.7293
10446104544
100.0000
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.5098
95.4885
99.6185
24.8854
651930865282524
96.0000
ltrigg-rtg1INDELC1_5HG002complexvarhetalt
0.0000
0.0000
99.6183
86.5847
0026111
100.0000
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.4278
99.2381
99.6183
71.9185
521452220
0.0000
eyeh-varpipeSNPtimap_l100_m1_e0hetalt
99.8088
100.0000
99.6183
63.7119
29026111
100.0000
raldana-dualsentieonSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6183
99.6183
99.6183
63.0465
522252221
50.0000
rpoplin-dv42SNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6183
99.6183
99.6183
66.9401
522252221
50.0000
hfeng-pmm2SNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6183
99.6183
99.6183
69.2308
522252221
50.0000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.3862
99.1554
99.6182
87.6455
234820234898
88.8889
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.2994
98.9826
99.6182
37.5156
17998185180046946
66.6667
ndellapenna-hhgaSNPtimap_l250_m1_e0*
98.1834
96.7897
99.6179
87.3096
44321474432179
52.9412
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1090
96.6453
99.6177
51.2288
573319957332220
90.9091
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.8615
94.2539
99.6175
50.6158
651239765112520
80.0000
raldana-dualsentieonINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
98.3623
97.1387
99.6172
75.9529
132439130153
60.0000
ltrigg-rtg2INDEL*map_sirenhomalt
98.9758
98.3427
99.6172
74.6678
2611442602107
70.0000
gduggal-snapfbSNPtifunc_cds*
99.7900
99.9637
99.6169
26.0872
13782513782532
3.7736
gduggal-bwaplatINDEL*map_l100_m0_e0homalt
67.5325
51.0806
99.6169
90.9281
26024926010
0.0000
ndellapenna-hhgaSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3149
99.0149
99.6167
57.6636
5508354855098212134
63.2075
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0051
98.4010
99.6166
36.8952
46777646771817
94.4444
cchapple-customINDELI1_5*homalt
99.7155
99.8147
99.6166
51.9774
6031611259755230228
99.1304
ltrigg-rtg1SNPtvmap_l100_m0_e0het
98.3382
97.0922
99.6165
55.2134
70122107013274
14.8148
ltrigg-rtg2SNPtifunc_cds*
99.7392
99.8622
99.6165
20.8703
137681913767531
1.8868
jlack-gatkSNPti**
99.7777
99.9393
99.6165
21.7408
2084246126520841828024364
4.5364
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.4289
93.4391
99.6164
40.1880
156091096158436161
100.0000
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4289
93.4391
99.6164
40.1880
156091096158436161
100.0000
ckim-gatkINDEL*HG002complexvarhomalt
99.7525
99.8890
99.6164
57.3371
26997302701010499
95.1923