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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 373 374 375 376 377 378 379 380 381 ... 1720 1721 » 18801-18850 / 86044 show all
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.3716	99.1196	99.6249	77.6829	1351	12	1328	5	3	60.0000
raldana-dualsentieon	SNP	tv	func_cds	het	99.7933	99.9624	99.6248	29.8500	2656	1	2655	10	0	0.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.5969	93.7477	99.6247	26.3674	7662	511	7698	29	29	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.6034	93.7599	99.6247	26.3649	7663	510	7699	29	29	100.0000
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.3959	99.1682	99.6246	82.9296	2623	22	2654	10	6	60.0000
ndellapenna-hhga	SNP	tv	map_l125_m2_e1	het	98.8154	98.0195	99.6244	69.7483	10344	209	10344	39	16	41.0256
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.2975	98.9729	99.6243	77.9307	1349	14	1326	5	3	60.0000
asubramanian-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4357	99.2481	99.6241	82.5115	264	2	265	1	1	100.0000
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.2551	98.8889	99.6241	60.5341	267	3	265	1	0	0.0000
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	94.5480	89.9642	99.6241	63.9077	251	28	265	1	1	100.0000
jlack-gatk	INDEL	*	*	hetalt	94.2358	89.4005	99.6240	58.0561	22562	2675	22786	86	78	90.6977
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.1377	92.8872	99.6239	30.9811	12785	979	12979	49	49	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7177	99.8119	99.6237	81.1758	1061	2	1059	4	2	50.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.4599	93.4908	99.6237	26.2417	7641	532	7678	29	29	100.0000
ckim-vqsr	INDEL	*	HG002complexvar	homalt	99.7470	99.8705	99.6237	57.3434	26992	35	27005	102	98	96.0784
ckim-vqsr	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5967	99.5697	99.6236	75.3470	33093	143	33087	125	100	80.0000
gduggal-snapvard	INDEL	I1_5	*	homalt	92.2555	85.9022	99.6235	34.4127	51909	8519	51074	193	178	92.2280
gduggal-bwaplat	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	91.6186	84.8043	99.6235	66.5948	9253	1658	9262	35	13	37.1429
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.9550	96.3415	99.6234	50.0434	3397	129	3439	13	12	92.3077
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.9550	96.3415	99.6234	50.0434	3397	129	3439	13	12	92.3077
jpowers-varprowl	SNP	*	map_l250_m1_e0	homalt	98.0829	96.5895	99.6231	89.3663	2379	84	2379	9	5	55.5556
ckim-isaac	SNP	tv	map_l150_m2_e0	*	67.6247	51.1845	99.6230	78.7586	5812	5543	5813	22	7	31.8182
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.3159	93.2216	99.6227	27.1443	7619	554	7658	29	29	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4350	99.2481	99.6226	83.0346	264	2	264	1	1	100.0000
asubramanian-gatk	SNP	ti	map_l250_m0_e0	*	32.2936	19.2701	99.6226	98.9715	264	1106	264	1	1	100.0000
hfeng-pmm1	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	97.9089	96.2533	99.6225	65.2640	2903	113	2903	11	0	0.0000
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7540	99.8860	99.6224	56.8960	7011	8	6859	26	11	42.3077
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.2896	93.1726	99.6223	27.3304	7615	558	7650	29	28	96.5517
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3339	99.0472	99.6223	38.0132	7381	71	7385	28	18	64.2857
gduggal-bwafb	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3797	99.1386	99.6220	59.2352	20025	174	20030	76	54	71.0526
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5851	99.5485	99.6217	39.7050	3969	18	3950	15	6	40.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8105	100.0000	99.6217	53.8819	1580	0	1580	6	0	0.0000
ckim-isaac	SNP	tv	map_l150_m1_e0	*	67.1487	50.6415	99.6215	77.0250	5526	5386	5527	21	7	33.3333
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.1310	94.7620	99.6215	40.8094	15830	875	16056	61	59	96.7213
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.1310	94.7620	99.6215	40.8094	15830	875	16056	61	59	96.7213
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.6223	93.7986	99.6213	24.3454	7593	502	7628	29	29	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.6289	93.8110	99.6213	24.3430	7594	501	7629	29	29	100.0000
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2453	98.8722	99.6212	80.9111	263	3	263	1	1	100.0000
ltrigg-rtg2	INDEL	D16_PLUS	HG002complexvar	homalt	96.9739	94.4637	99.6212	60.8309	273	16	263	1	1	100.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	98.6210	97.6408	99.6211	50.6118	6746	163	6836	26	12	46.1538
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4816	99.3427	99.6209	60.8825	1058	7	1051	4	2	50.0000
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.0426	94.5944	99.6209	40.6185	15802	903	16029	61	60	98.3607
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.0426	94.5944	99.6209	40.6185	15802	903	16029	61	60	98.3607
gduggal-bwaplat	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	90.1566	82.3347	99.6207	65.0618	797	171	788	3	3	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	98.4896	97.3839	99.6207	39.3186	23898	642	23900	91	86	94.5055
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.4322	99.2443	99.6207	88.9340	788	6	788	3	3	100.0000
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.1399	92.8943	99.6204	36.5756	15518	1187	15746	60	60	100.0000
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.1399	92.8943	99.6204	36.5756	15518	1187	15746	60	60	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.4972	93.5639	99.6204	24.2463	7574	521	7610	29	29	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.1302	92.8764	99.6203	36.5800	15515	1190	15743	60	60	100.0000

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