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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 370 371 372 373 374 375 376 377 378 ... 1720 1721 » 18651-18700 / 86044 show all
gduggal-snapfb	SNP	ti	map_l100_m0_e0	homalt	97.3012	95.0733	99.6360	73.4569	7391	383	7391	27	15	55.5556
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.8065	92.2605	99.6360	30.7769	12946	1086	13139	48	48	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4854	99.3353	99.6359	61.3327	1644	11	1642	6	3	50.0000
egarrison-hhga	SNP	tv	map_l100_m0_e0	het	99.0740	98.5184	99.6359	68.9508	7115	107	7115	26	10	38.4615
ckim-isaac	SNP	ti	map_l150_m0_e0	het	74.1407	59.0347	99.6358	83.5333	3009	2088	3009	11	1	9.0909
ndellapenna-hhga	SNP	ti	map_l250_m2_e1	*	98.3031	97.0055	99.6358	87.9552	4924	152	4924	18	9	50.0000
egarrison-hhga	SNP	tv	map_l150_m0_e0	*	98.9629	98.2990	99.6357	78.3979	4103	71	4103	15	6	40.0000
gduggal-snapplat	SNP	ti	HG002compoundhet	hetalt	97.1675	94.8187	99.6357	22.1277	549	30	547	2	2	100.0000
rpoplin-dv42	SNP	ti	map_l100_m1_e0	*	99.4597	99.2844	99.6356	62.6996	47588	343	47581	174	118	67.8161
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.4755	99.3161	99.6354	69.3829	11473	79	11478	42	36	85.7143
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4755	99.3161	99.6354	69.3829	11473	79	11478	42	36	85.7143
qzeng-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8173	100.0000	99.6353	62.2834	1383	0	1366	5	2	40.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3353	99.0372	99.6352	71.5761	32916	320	32773	120	43	35.8333
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.4536	93.4690	99.6351	39.9267	15614	1091	15838	58	57	98.2759
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.4536	93.4690	99.6351	39.9267	15614	1091	15838	58	57	98.2759
hfeng-pmm3	SNP	*	map_l125_m2_e1	*	99.5664	99.4979	99.6351	71.1769	46965	237	46959	172	26	15.1163
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2862	98.9399	99.6350	37.4196	7373	79	7370	27	2	7.4074
ltrigg-rtg2	INDEL	C1_5	HG002complexvar	hetalt	0.0000	0.0000	99.6350	86.5818	0	0	273	1	1	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l100_m0_e0	*	97.2714	95.0174	99.6350	76.9941	820	43	819	3	1	33.3333
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	77.9120	63.9658	99.6350	31.9608	5155	2904	5186	19	18	94.7368
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	77.9120	63.9658	99.6350	31.9608	5155	2904	5186	19	18	94.7368
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5140	99.3932	99.6350	71.2386	819	5	819	3	1	33.3333
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5140	99.3932	99.6350	71.6258	819	5	819	3	1	33.3333
cchapple-custom	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	98.1802	96.7672	99.6350	61.0934	449	15	1092	4	4	100.0000
cchapple-custom	INDEL	I1_5	HG002complexvar	*	99.1800	98.7291	99.6350	52.8581	32939	424	31939	117	104	88.8889
jmaeng-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.2177	93.0272	99.6348	58.3838	14342	1075	14459	53	52	98.1132
ltrigg-rtg2	INDEL	*	*	*	99.2539	98.8759	99.6347	56.1284	340668	3873	340411	1248	516	41.3462
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.6384	95.7207	99.6345	39.6588	1275	57	5180	19	17	89.4737
ckim-gatk	INDEL	*	HG002complexvar	*	99.3276	99.0226	99.6345	58.1713	76186	752	76048	279	226	81.0036
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7255	99.8168	99.6344	78.0409	545	1	545	2	2	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7255	99.8168	99.6344	77.0842	545	1	545	2	1	50.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7255	99.8168	99.6344	77.4526	545	1	545	2	2	100.0000
ghariani-varprowl	SNP	*	map_l100_m2_e0	homalt	99.3166	99.0008	99.6343	64.4739	27248	275	27248	100	67	67.0000
gduggal-snapplat	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	88.3969	79.4375	99.6342	42.5683	2175	563	2179	8	4	50.0000
gduggal-snapvard	SNP	*	map_l125_m0_e0	homalt	97.1180	94.7259	99.6341	71.0042	6358	354	6263	23	18	78.2609
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3917	99.1505	99.6341	69.2077	817	7	817	3	1	33.3333
gduggal-bwaplat	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	96.5902	93.7269	99.6340	52.3424	3810	255	3811	14	3	21.4286
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2109	98.7915	99.6339	57.3510	1635	20	1633	6	3	50.0000
mlin-fermikit	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	44.9406	29.0138	99.6337	37.6712	253	619	272	1	1	100.0000
eyeh-varpipe	SNP	ti	map_l100_m2_e0	hetalt	99.8165	100.0000	99.6337	65.9176	30	0	272	1	1	100.0000
hfeng-pmm3	SNP	*	map_l125_m2_e0	*	99.5641	99.4949	99.6335	71.1339	46487	236	46481	171	26	15.2047
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4495	99.2663	99.6334	73.6527	1353	10	1359	5	3	60.0000
asubramanian-gatk	SNP	*	map_l150_m0_e0	het	34.0434	20.5290	99.6333	97.2059	1630	6310	1630	6	3	50.0000
jlack-gatk	SNP	tv	map_l125_m0_e0	homalt	98.7279	97.8388	99.6332	70.1233	2173	48	2173	8	5	62.5000
ltrigg-rtg1	SNP	tv	map_l125_m2_e1	het	98.7185	97.8205	99.6332	61.5213	10323	230	10322	38	5	13.1579
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5195	99.4061	99.6332	48.7604	10042	60	10049	37	25	67.5676
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6541	99.6750	99.6331	31.4341	4601	15	4616	17	2	11.7647
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.4887	99.3450	99.6329	63.1294	1365	9	1357	5	1	20.0000
asubramanian-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.3592	99.0869	99.6329	31.6608	2713	25	2714	10	1	10.0000
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.6397	99.6465	99.6329	33.8966	7329	26	7327	27	8	29.6296

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