PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
18601-18650 / 86044 show all
egarrison-hhgaSNPtimap_l150_m0_e0het
98.7730
97.9203
99.6406
81.1953
49911064991186
33.3333
jli-customINDELI1_5map_sirenhet
99.1936
98.7507
99.6405
79.0669
166021166361
16.6667
ltrigg-rtg2INDELC1_5HG002complexvarhomalt
0.0000
0.0000
99.6403
90.3972
0027710
0.0000
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.7479
99.8558
99.6403
66.1800
13852138550
0.0000
ckim-vqsrSNPti*hetalt
97.3638
95.1890
99.6403
53.2773
5542855422
100.0000
gduggal-bwavardSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
97.6353
95.7094
99.6403
58.7026
167375166265
83.3333
ltrigg-rtg2SNPtv*het
99.7405
99.8410
99.6402
19.4900
590763941590991213460
2.8116
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.2110
98.7855
99.6402
72.5769
3579443600133
23.0769
hfeng-pmm3INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7158
99.7919
99.6397
70.7329
306976430697111106
95.4955
dgrover-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.8320
96.0887
99.6397
60.4528
14814603149325453
98.1481
hfeng-pmm1INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6995
99.7594
99.6396
71.1645
306877430687111109
98.1982
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
98.9195
98.2099
99.6395
45.6518
3621663593137
53.8462
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
98.3459
97.0855
99.6394
45.0946
246574248798
88.8889
raldana-dualsentieonINDELD1_5*homalt
99.7919
99.9448
99.6394
61.4897
488992748904177175
98.8701
rpoplin-dv42SNPtimap_l100_m2_e0*
99.4660
99.2933
99.6392
64.7198
4861534648608176120
68.1818
rpoplin-dv42SNPtimap_l100_m2_e1*
99.4666
99.2947
99.6390
64.7230
4913634949129178121
67.9775
ltrigg-rtg1INDELC1_5HG002complexvarhomalt
0.0000
0.0000
99.6390
90.5814
0027610
0.0000
ltrigg-rtg1INDELD1_5map_l100_m0_e0het
96.3290
93.2318
99.6390
71.5167
5514055220
0.0000
ckim-isaacSNP*map_l250_m0_e0homalt
60.9272
43.8792
99.6390
88.3516
27635327611
100.0000
gduggal-bwaplatINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
84.4037
73.2095
99.6390
55.5377
82830382833
100.0000
eyeh-varpipeSNPtimap_l100_m2_e1hetalt
99.8192
100.0000
99.6390
65.8025
31027611
100.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.8009
99.9637
99.6386
38.4564
275712757102
20.0000
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.0742
96.5582
99.6386
56.1134
3032710813032811094
85.4545
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0742
96.5582
99.6386
56.1134
3032710813032811094
85.4545
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.6385
99.6385
99.6385
58.9249
13785137854
80.0000
bgallagher-sentieonINDELD1_5**
99.5437
99.4494
99.6383
60.2111
145937808145993530397
74.9057
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7285
99.8188
99.6383
55.6923
60611160612222
100.0000
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.2017
98.7689
99.6382
66.9061
3851483856148
57.1429
gduggal-bwavardSNP*func_cds*
99.3111
98.9862
99.6380
30.1556
17966184178926523
35.3846
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.6260
99.6141
99.6379
82.9126
4130164128158
53.3333
eyeh-varpipeSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7733
99.9091
99.6378
40.5384
21992220184
50.0000
gduggal-bwavardINDELD1_5map_l100_m1_e0homalt
97.1395
94.7635
99.6377
74.6207
5613155022
100.0000
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.6976
99.7579
99.6374
34.5809
24726247393
33.3333
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.5102
97.4083
99.6374
38.9351
23904636239068770
80.4598
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.5922
99.5471
99.6374
86.6820
10995109944
100.0000
gduggal-bwavardINDELD1_5HG002complexvarhomalt
96.6460
93.8290
99.6373
42.9597
994465493403422
64.7059
ltrigg-rtg1SNPtv*het
99.7418
99.8465
99.6372
20.0234
590796908591027215250
2.3234
jli-customINDELD1_5segdup*
99.5918
99.5467
99.6370
94.3313
10985109841
25.0000
hfeng-pmm2INDELD1_5segdup*
99.5010
99.3654
99.6370
94.5866
10967109840
0.0000
hfeng-pmm1INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9724
98.3166
99.6370
70.9510
92859159092766338265
78.4024
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4442
99.2523
99.6368
83.0397
4115314115157
46.6667
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.8097
92.2658
99.6368
36.6287
154131292156355757
100.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.8097
92.2658
99.6368
36.6287
154131292156355757
100.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.5419
95.5335
99.6365
30.2678
10609496106903938
97.4359
ndellapenna-hhgaSNPtimap_l150_m0_e0het
98.1786
96.7628
99.6364
79.7339
49321654932187
38.8889
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
99.5462
99.4562
99.6364
61.3039
16469164463
50.0000
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4555
99.2754
99.6364
86.7438
10968109643
75.0000
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.5570
99.4777
99.6364
55.6678
1123759112344140
97.5610
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.9920
92.6052
99.6360
39.6618
546043654752020
100.0000
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.9920
92.6052
99.6360
39.6618
546043654752020
100.0000