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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 368 369 370 371 372 373 374 375 376 ... 1720 1721 » 18551-18600 / 86044 show all
rpoplin-dv42	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	94.4711	89.8077	99.6454	42.6596	2802	318	2810	10	9	90.0000
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	93.8029	88.6076	99.6454	70.1903	280	36	281	1	1	100.0000
ckim-gatk	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.3739	93.3105	99.6454	63.1854	544	39	562	2	2	100.0000
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.4570	99.2695	99.6453	71.3824	16851	124	16855	60	48	80.0000
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4570	99.2695	99.6453	71.3824	16851	124	16855	60	48	80.0000
gduggal-snapplat	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	96.7832	94.0810	99.6452	50.9082	5897	371	5898	21	4	19.0476
ltrigg-rtg1	SNP	tv	map_l150_m1_e0	het	98.3075	97.0055	99.6450	62.4882	6738	208	6736	24	4	16.6667
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.2339	98.8263	99.6450	83.3103	842	10	842	3	3	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.5075	97.3958	99.6448	66.8042	561	15	561	2	2	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.2821	93.1389	99.6448	63.2266	543	40	561	2	2	100.0000
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.6448	99.6448	99.6448	54.2090	2244	8	2244	8	6	75.0000
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7204	99.7965	99.6444	58.5971	3923	8	3923	14	1	7.1429
ghariani-varprowl	SNP	*	map_l150_m2_e0	homalt	98.9108	98.1879	99.6443	74.5311	11487	212	11487	41	25	60.9756
asubramanian-gatk	INDEL	I6_15	HG002complexvar	het	98.1220	96.6454	99.6443	60.1594	2276	79	2241	8	3	37.5000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.3000	98.9583	99.6441	61.5332	570	6	560	2	0	0.0000
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1826	98.7253	99.6441	48.7010	3640	47	3640	13	10	76.9231
gduggal-bwafb	SNP	tv	map_l250_m1_e0	homalt	98.8817	98.1308	99.6441	88.5431	840	16	840	3	3	100.0000
qzeng-custom	SNP	*	HG002complexvar	hetalt	97.3511	95.1613	99.6441	38.9130	295	15	280	1	1	100.0000
qzeng-custom	SNP	tv	HG002complexvar	hetalt	97.3511	95.1613	99.6441	38.9130	295	15	280	1	1	100.0000
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.6925	99.7409	99.6441	69.2652	3080	8	3080	11	9	81.8182
asubramanian-gatk	SNP	tv	map_l150_m2_e0	het	42.5209	27.0270	99.6439	95.4728	1960	5292	1959	7	1	14.2857
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.6600	99.6762	99.6439	69.2790	3078	10	3078	11	9	81.8182
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.6438	99.6438	99.6438	69.4439	3077	11	3077	11	8	72.7273
asubramanian-gatk	SNP	ti	map_l150_m2_e0	het	44.0116	28.2431	99.6437	94.9202	3638	9243	3636	13	5	38.4615
gduggal-snapplat	SNP	ti	func_cds	*	99.5243	99.4052	99.6437	28.8978	13705	82	13705	49	5	10.2041
gduggal-bwaplat	INDEL	I1_5	map_siren	homalt	81.6943	69.2244	99.6437	85.3233	839	373	839	3	3	100.0000
ltrigg-rtg2	SNP	tv	map_l100_m1_e0	het	98.7963	97.9633	99.6436	50.7412	15103	314	15098	54	2	3.7037
ndellapenna-hhga	SNP	tv	map_l100_m0_e0	*	98.9920	98.3490	99.6435	65.9868	10901	183	10901	39	17	43.5897
jpowers-varprowl	SNP	*	HG002complexvar	*	99.4683	99.2937	99.6435	20.7160	749051	5328	749404	2681	1602	59.7538
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1143	98.5907	99.6435	73.6743	1679	24	1677	6	0	0.0000
ckim-gatk	INDEL	I16_PLUS	*	hetalt	95.7167	92.0877	99.6434	54.9150	1932	166	1956	7	6	85.7143
cchapple-custom	INDEL	D1_5	HG002complexvar	*	99.2131	98.7865	99.6433	53.2355	32318	397	31288	112	96	85.7143
ckim-vqsr	INDEL	I16_PLUS	*	hetalt	95.6650	91.9924	99.6430	54.9403	1930	168	1954	7	6	85.7143
mlin-fermikit	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	82.7315	70.7276	99.6429	31.3725	836	346	837	3	3	100.0000
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.5094	99.3762	99.6429	67.2531	6691	42	6696	24	19	79.1667
gduggal-bwaplat	INDEL	I1_5	map_l150_m2_e1	*	68.8039	52.5424	99.6429	96.3688	279	252	279	1	0	0.0000
mlin-fermikit	INDEL	D6_15	*	hetalt	78.2531	64.4238	99.6427	35.0794	5266	2908	5298	19	18	94.7368
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	98.8701	98.1095	99.6426	59.5927	10898	210	10873	39	20	51.2821
ltrigg-rtg1	SNP	ti	map_l250_m0_e0	het	94.3034	89.5075	99.6424	84.4255	836	98	836	3	0	0.0000
astatham-gatk	INDEL	*	HG002complexvar	homalt	99.7747	99.9075	99.6422	57.3610	27002	25	27012	97	94	96.9072
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.5105	99.3794	99.6419	52.1832	1121	7	1113	4	2	50.0000
gduggal-bwavard	SNP	*	map_l150_m0_e0	homalt	98.1354	96.6740	99.6417	77.0204	3953	136	3893	14	10	71.4286
ltrigg-rtg1	INDEL	I6_15	HG002complexvar	hetalt	95.3064	91.3328	99.6416	58.0293	1117	106	1112	4	4	100.0000
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	96.8922	94.2909	99.6412	27.0291	10471	634	10553	38	38	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	96.8827	94.2729	99.6411	27.0328	10469	636	10551	38	38	100.0000
rpoplin-dv42	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	92.8940	87.0028	99.6409	34.1996	2209	330	2220	8	8	100.0000
astatham-gatk	SNP	ti	map_l125_m0_e0	*	92.8568	86.9378	99.6407	77.9287	11095	1667	11093	40	20	50.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.0795	96.5665	99.6406	67.0543	15525	552	15525	56	32	57.1429
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.0795	96.5665	99.6406	67.0543	15525	552	15525	56	32	57.1429
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	96.9120	94.3289	99.6406	81.3092	2495	150	2495	9	3	33.3333

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