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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 367 368 369 370 371 372 373 374 375 ... 1720 1721 » 18501-18550 / 86044 show all
jli-custom	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.1030	94.6827	99.6503	63.0013	552	31	570	2	2	100.0000
asubramanian-gatk	INDEL	D1_5	*	het	99.3754	99.1025	99.6499	59.9427	86788	786	86804	305	126	41.3115
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.3863	99.1243	99.6497	55.8050	566	5	569	2	1	50.0000
ltrigg-rtg1	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.3152	95.0875	99.6497	51.5280	1684	87	1707	6	5	83.3333
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.1027	94.6827	99.6497	66.9177	552	31	569	2	2	100.0000
gduggal-bwavard	INDEL	D1_5	map_l100_m2_e0	homalt	97.2307	94.9264	99.6497	75.8051	580	31	569	2	2	100.0000
astatham-gatk	SNP	*	map_l125_m1_e0	het	85.6838	75.1515	99.6496	79.7424	21337	7055	21331	75	27	36.0000
asubramanian-gatk	SNP	*	map_l150_m1_e0	het	41.8810	26.5117	99.6495	95.0572	5121	14195	5118	18	5	27.7778
gduggal-bwafb	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7130	99.7766	99.6495	46.4322	6254	14	6254	22	9	40.9091
ltrigg-rtg2	INDEL	*	HG002compoundhet	hetalt	97.1901	94.8491	99.6495	57.3566	23883	1297	23882	84	83	98.8095
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.4416	99.2346	99.6494	43.8167	3630	28	5401	19	13	68.4211
asubramanian-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.2192	98.7929	99.6492	71.7503	3110	38	3125	11	9	81.8182
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.9905	98.3405	99.6492	44.7855	9363	158	9375	33	31	93.9394
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.2979	98.9492	99.6491	52.9703	565	6	568	2	1	50.0000
jmaeng-gatk	SNP	*	map_l250_m0_e0	homalt	62.1444	45.1510	99.6491	95.8315	284	345	284	1	1	100.0000
hfeng-pmm1	SNP	tv	map_l125_m1_e0	*	99.4714	99.2945	99.6491	69.3117	15903	113	15901	56	16	28.5714
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.0122	94.5111	99.6491	66.8219	551	32	568	2	2	100.0000
bgallagher-sentieon	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.2548	94.9731	99.6489	58.8526	14642	775	14759	52	52	100.0000
jpowers-varprowl	SNP	*	map_l150_m1_e0	homalt	98.9052	98.1726	99.6488	74.4202	11067	206	11067	39	26	66.6667
mlin-fermikit	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	82.6836	70.6547	99.6488	33.9430	4813	1999	4823	17	17	100.0000
asubramanian-gatk	SNP	ti	map_l150_m2_e1	het	44.1440	28.3519	99.6487	94.9230	3690	9325	3688	13	5	38.4615
ltrigg-rtg1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.3992	97.1808	99.6485	64.4597	586	17	567	2	0	0.0000
ghariani-varprowl	SNP	*	map_l150_m2_e1	homalt	98.9183	98.1990	99.6482	74.5368	11614	213	11614	41	25	60.9756
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7650	99.8824	99.6479	51.1188	849	1	849	3	3	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7650	99.8824	99.6479	51.2307	849	1	849	3	3	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7650	99.8824	99.6479	51.0626	849	1	849	3	3	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7650	99.8824	99.6479	51.2307	849	1	849	3	3	100.0000
jli-custom	INDEL	I16_PLUS	*	hetalt	96.3839	93.3270	99.6479	53.7674	1958	140	1981	7	7	100.0000
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	94.1575	89.2405	99.6479	69.7551	282	34	283	1	1	100.0000
rpoplin-dv42	INDEL	I1_5	HG002complexvar	*	99.3509	99.0558	99.6477	56.5141	33048	315	33091	117	105	89.7436
gduggal-bwavard	INDEL	I1_5	map_siren	homalt	96.9037	94.3069	99.6476	66.3105	1143	69	1131	4	2	50.0000
astatham-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.7032	97.7767	99.6475	68.5461	1979	45	1979	7	5	71.4286
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.7395	93.9966	99.6473	67.3951	548	35	565	2	2	100.0000
ghariani-varprowl	SNP	*	map_l150_m0_e0	homalt	98.0874	96.5762	99.6467	77.5747	3949	140	3949	14	6	42.8571
asubramanian-gatk	SNP	*	map_l250_m0_e0	het	31.5260	18.7251	99.6466	99.1633	282	1224	282	1	1	100.0000
bgallagher-sentieon	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.5572	93.6535	99.6466	65.5088	546	37	564	2	2	100.0000
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2958	98.9474	99.6466	51.0098	846	9	846	3	0	0.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	93.9805	88.9241	99.6466	70.0529	281	35	282	1	1	100.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7054	99.7642	99.6466	52.8246	2538	6	2538	9	1	11.1111
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	93.9805	88.9241	99.6466	70.1162	281	35	282	1	1	100.0000
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.6358	95.7046	99.6464	30.5076	10628	477	10709	38	37	97.3684
asubramanian-gatk	SNP	tv	HG002compoundhet	het	98.0320	96.4691	99.6463	55.8548	4508	165	4508	16	9	56.2500
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2366	98.8304	99.6462	50.2931	845	10	845	3	0	0.0000
ltrigg-rtg1	SNP	tv	map_l150_m2_e0	het	98.3588	97.1042	99.6461	64.9467	7042	210	7040	25	4	16.0000
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5625	99.4792	99.6460	61.1149	573	3	563	2	0	0.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.6854	97.7431	99.6460	66.1879	563	13	563	2	2	100.0000
hfeng-pmm3	INDEL	*	segdup	*	99.3329	99.0219	99.6459	93.8860	2531	25	2533	9	3	33.3333
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.3258	97.0402	99.6459	43.8344	10754	328	10693	38	34	89.4737
ltrigg-rtg1	INDEL	*	*	het	99.1142	98.5886	99.6455	55.1307	191393	2740	190584	678	162	23.8938
rpoplin-dv42	INDEL	I6_15	HG002complexvar	hetalt	95.0851	90.9240	99.6454	54.5161	1112	111	1124	4	4	100.0000

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