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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 366 367 368 369 370 371 372 373 374 ... 1720 1721 » 18451-18500 / 86044 show all
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.7133	97.7896	99.6546	56.8394	1106	25	1154	4	4	100.0000
gduggal-bwavard	SNP	ti	*	*	99.3434	99.0343	99.6545	21.4644	2065379	20139	2057255	7133	2188	30.6743
ndellapenna-hhga	SNP	*	map_l150_m2_e1	het	98.6659	97.6968	99.6544	74.7044	19894	469	19894	69	30	43.4783
raldana-dualsentieon	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3348	99.0173	99.6544	63.3928	27406	272	27397	95	13	13.6842
ckim-dragen	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.7569	99.8600	99.6542	57.5039	17826	25	17865	62	15	24.1935
cchapple-custom	SNP	*	func_cds	*	99.7855	99.9174	99.6539	26.7611	18135	15	18142	63	1	1.5873
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.7696	99.8855	99.6539	55.1919	27927	32	27926	97	8	8.2474
gduggal-snapfb	SNP	ti	segdup	homalt	99.6936	99.7335	99.6538	89.7294	7485	20	7484	26	9	34.6154
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7920	99.9306	99.6537	69.7338	1439	1	1439	5	0	0.0000
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	98.2763	96.9365	99.6537	46.3792	2563	81	2590	9	8	88.8889
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	93.9208	88.8117	99.6537	86.9255	1151	145	1151	4	0	0.0000
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5262	99.3991	99.6536	77.7226	6617	40	6617	23	9	39.1304
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.0631	98.4795	99.6536	52.7550	842	13	863	3	1	33.3333
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6967	99.7400	99.6534	39.6128	4604	12	4600	16	2	12.5000
ckim-isaac	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	95.1611	91.0564	99.6533	48.4903	3146	309	3162	11	5	45.4545
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.7312	99.8094	99.6531	71.4710	3142	6	3160	11	8	72.7273
ghariani-varprowl	SNP	*	map_l125_m1_e0	homalt	99.0868	98.5271	99.6530	67.5166	16656	249	16656	58	39	67.2414
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6528	99.6528	99.6528	69.7320	574	2	574	2	2	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6526	99.6524	99.6528	63.6057	860	3	861	3	2	66.6667
mlin-fermikit	SNP	*	HG002complexvar	hetalt	95.9866	92.5806	99.6528	34.0961	287	23	287	1	1	100.0000
mlin-fermikit	SNP	tv	HG002complexvar	hetalt	95.9866	92.5806	99.6528	34.0961	287	23	287	1	1	100.0000
hfeng-pmm1	INDEL	*	*	*	99.3397	99.0289	99.6526	57.3618	341196	3346	341057	1189	887	74.6005
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.6813	99.7101	99.6525	34.1910	3440	10	3441	12	3	25.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	98.9113	98.1812	99.6524	74.7228	5830	108	6020	21	21	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5944	99.5365	99.6524	64.2502	859	4	860	3	2	66.6667
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5944	99.5365	99.6524	63.5095	859	4	860	3	2	66.6667
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5944	99.5365	99.6524	61.5590	859	4	860	3	2	66.6667
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5944	99.5365	99.6524	64.2502	859	4	860	3	2	66.6667
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.8100	92.2531	99.6523	26.1175	4287	360	4299	15	15	100.0000
dgrover-gatk	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.3738	95.1973	99.6522	66.4723	555	28	573	2	2	100.0000
cchapple-custom	INDEL	D1_5	map_l100_m1_e0	homalt	98.6333	97.6351	99.6522	79.5374	578	14	573	2	2	100.0000
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.6666	99.6812	99.6520	39.8884	3439	11	3436	12	2	16.6667
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3392	99.0283	99.6520	55.6062	6013	59	6013	21	19	90.4762
rpoplin-dv42	SNP	*	map_siren	het	99.5263	99.4010	99.6518	54.9841	90446	545	90433	316	159	50.3165
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7634	99.8753	99.6517	47.8261	4006	5	4006	14	0	0.0000
astatham-gatk	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.2837	95.0257	99.6516	66.3934	554	29	572	2	2	100.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.1132	96.6216	99.6516	87.6280	2288	80	2288	8	8	100.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4779	99.3048	99.6516	61.8182	857	6	858	3	2	66.6667
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7260	99.8005	99.6515	49.5605	4003	8	4003	14	2	14.2857
ndellapenna-hhga	SNP	ti	map_l250_m2_e0	*	98.3102	97.0048	99.6513	87.8762	4858	150	4858	17	9	52.9412
ndellapenna-hhga	SNP	*	map_l150_m1_e0	het	98.6191	97.6082	99.6512	73.3059	18854	462	18854	66	30	45.4545
ltrigg-rtg1	SNP	tv	map_l100_m1_e0	het	98.9516	98.2617	99.6512	54.6439	15149	268	15144	53	5	9.4340
ltrigg-rtg1	SNP	tv	map_l150_m2_e1	het	98.3805	97.1421	99.6509	65.0308	7138	210	7136	25	4	16.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3610	99.0730	99.6508	61.9238	855	8	856	3	2	66.6667
asubramanian-gatk	SNP	tv	map_l150_m2_e1	het	42.7242	27.1911	99.6507	95.4527	1998	5350	1997	7	1	14.2857
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.4011	86.1348	99.6507	30.4797	1112	179	1141	4	4	100.0000
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5884	99.5263	99.6506	48.9164	3992	19	3993	14	1	7.1429
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3025	98.9571	99.6503	63.7669	854	9	855	3	2	66.6667
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.9917	98.3416	99.6503	72.5659	593	10	570	2	2	100.0000
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.6503	99.6503	99.6503	49.2608	855	3	855	3	3	100.0000

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