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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 365 366 367 368 369 370 371 372 373 ... 1720 1721 » 18401-18450 / 86044 show all
hfeng-pmm3	SNP	*	map_l100_m2_e0	het	99.5523	99.4461	99.6587	66.2016	46142	257	46131	158	14	8.8608
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.1337	98.6144	99.6585	48.5413	2918	41	2918	10	2	20.0000
ckim-vqsr	SNP	ti	map_siren	*	86.3605	76.1935	99.6585	68.7036	76464	23891	76451	262	25	9.5420
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	95.8128	92.2530	99.6584	86.7818	1167	98	1167	4	4	100.0000
hfeng-pmm2	INDEL	D1_5	map_siren	homalt	99.6580	99.6575	99.6584	78.7708	1164	4	1167	4	4	100.0000
ltrigg-rtg1	SNP	tv	map_l125_m2_e0	het	98.7191	97.7974	99.6584	61.3796	10212	230	10211	35	5	14.2857
bgallagher-sentieon	INDEL	D1_5	map_siren	homalt	99.6580	99.6575	99.6584	81.1615	1164	4	1167	4	4	100.0000
ckim-dragen	INDEL	D1_5	map_l100_m1_e0	homalt	99.1508	98.6486	99.6581	83.0336	584	8	583	2	2	100.0000
jli-custom	INDEL	*	*	*	99.3675	99.0788	99.6580	57.6935	341368	3174	341213	1171	951	81.2126
hfeng-pmm3	SNP	*	map_l100_m2_e1	het	99.5538	99.4499	99.6580	66.2190	46640	258	46629	160	14	8.7500
gduggal-bwaplat	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	93.5398	88.1295	99.6579	61.6024	15138	2039	15150	52	17	32.6923
mlin-fermikit	SNP	tv	func_cds	het	99.1679	98.6827	99.6579	21.9982	2622	35	2622	9	0	0.0000
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.7024	99.7469	99.6579	53.4220	6699	17	6701	23	8	34.7826
asubramanian-gatk	SNP	ti	map_l250_m1_e0	*	32.0381	19.0871	99.6579	98.2478	874	3705	874	3	1	33.3333
bgallagher-sentieon	SNP	tv	func_cds	*	99.8287	100.0000	99.6579	29.0453	4371	0	4370	15	0	0.0000
dgrover-gatk	INDEL	D1_5	map_siren	homalt	99.5720	99.4863	99.6578	81.5178	1162	6	1165	4	4	100.0000
hfeng-pmm1	INDEL	*	*	het	99.4245	99.1923	99.6578	58.3471	192565	1568	192194	660	374	56.6667
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.0730	98.4951	99.6577	70.6945	2618	40	2620	9	3	33.3333
jmaeng-gatk	INDEL	D1_5	*	homalt	99.7928	99.9285	99.6576	62.5365	48891	35	48898	168	166	98.8095
hfeng-pmm3	SNP	*	map_l100_m1_e0	het	99.5486	99.4400	99.6575	64.8095	45105	254	45094	155	14	9.0323
raldana-dualsentieon	INDEL	D1_5	map_siren	homalt	99.5289	99.4007	99.6575	79.9209	1161	7	1164	4	4	100.0000
hfeng-pmm3	INDEL	*	segdup	het	99.3844	99.1132	99.6571	94.2790	1453	13	1453	5	0	0.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2002	98.7477	99.6569	58.1790	3233	41	3195	11	7	63.6364
gduggal-bwafb	SNP	ti	*	hetalt	99.7425	99.8282	99.6569	53.0218	581	1	581	2	2	100.0000
cchapple-custom	INDEL	D1_5	HG002complexvar	het	99.3604	99.0657	99.6568	53.2015	20571	194	21196	73	60	82.1918
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.2521	96.8864	99.6568	72.9143	15092	485	15100	52	45	86.5385
gduggal-bwavard	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.4522	95.3431	99.6567	58.4374	1167	57	1161	4	3	75.0000
ltrigg-rtg2	SNP	tv	map_l100_m0_e0	het	98.0155	96.4276	99.6566	50.1035	6964	258	6965	24	1	4.1667
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7349	99.8133	99.6566	54.0176	10159	19	10157	35	30	85.7143
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7419	99.8278	99.6562	49.2016	4058	7	4058	14	0	0.0000
ltrigg-rtg1	SNP	ti	map_siren	het	99.2961	98.9388	99.6561	47.8678	61719	662	61718	213	10	4.6948
hfeng-pmm1	SNP	*	*	hetalt	99.7131	99.7704	99.6560	48.7962	869	2	869	3	3	100.0000
hfeng-pmm1	SNP	tv	*	hetalt	99.7131	99.7704	99.6560	48.7962	869	2	869	3	3	100.0000
qzeng-custom	SNP	tv	func_cds	*	99.6678	99.6797	99.6560	35.7311	4357	14	4345	15	0	0.0000
cchapple-custom	INDEL	I1_5	segdup	het	99.1750	98.6989	99.6558	95.3303	531	7	579	2	0	0.0000
hfeng-pmm3	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	98.8359	98.0296	99.6557	67.1059	3184	64	3184	11	0	0.0000
ndellapenna-hhga	SNP	*	map_l150_m2_e0	het	98.6606	97.6854	99.6554	74.6307	19667	466	19667	68	30	44.1176
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	97.7960	96.0049	99.6553	58.3497	5503	229	5493	19	12	63.1579
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4308	99.2074	99.6552	61.9169	28036	224	28038	97	74	76.2887
ltrigg-rtg2	SNP	*	map_siren	het	99.2163	98.7812	99.6552	46.0328	89881	1109	89887	311	15	4.8232
gduggal-bwaplat	INDEL	D1_5	map_siren	homalt	85.0834	74.2295	99.6552	84.5085	867	301	867	3	2	66.6667
rpoplin-dv42	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	92.8925	86.9894	99.6550	36.0629	2300	344	2311	8	8	100.0000
jpowers-varprowl	SNP	*	map_l250_m2_e0	homalt	98.1866	96.7610	99.6549	90.0329	2599	87	2599	9	5	55.5556
hfeng-pmm3	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.9496	98.2541	99.6549	70.5915	92800	1649	92707	321	262	81.6199
ckim-vqsr	INDEL	*	HG002complexvar	*	99.2578	98.8640	99.6548	58.2159	76064	874	75924	263	222	84.4106
gduggal-bwavard	INDEL	D1_5	map_l100_m2_e1	homalt	97.1870	94.8387	99.6546	75.9352	588	32	577	2	2	100.0000
ckim-dragen	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.8216	96.0549	99.6546	66.2784	560	23	577	2	2	100.0000
ckim-dragen	INDEL	D1_5	map_siren	homalt	99.2693	98.8870	99.6546	81.5458	1155	13	1154	4	3	75.0000
ltrigg-rtg1	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.6899	97.7438	99.6546	70.7311	92318	2131	92612	321	168	52.3364
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.6112	97.5894	99.6546	48.0405	7206	178	7214	25	15	60.0000

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