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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
18351-18400 / 86044 show all
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
98.5556
97.4729
99.6627
53.9495
574714959092020
100.0000
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
98.5556
97.4729
99.6627
53.9495
574714959092020
100.0000
gduggal-snapvardSNP*map_l100_m0_e0homalt
97.5410
95.5077
99.6627
63.7532
11098522109323728
75.6757
rpoplin-dv42INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.9646
94.4089
99.6626
61.7069
560633256121918
94.7368
eyeh-varpipeSNPtvHG002complexvarhetalt
99.6700
99.6774
99.6626
29.8422
309135451211
91.6667
hfeng-pmm1SNPtvmap_l125_m2_e1*
99.4888
99.3156
99.6626
71.0607
16543114165415616
28.5714
ckim-dragenINDELD1_5HG002complexvar*
99.5269
99.3917
99.6625
58.3864
325161993247811086
78.1818
ghariani-varprowlSNP*map_l125_m2_e0homalt
99.1058
98.5554
99.6624
70.0500
17124251171245839
67.2414
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.6147
97.5887
99.6624
46.5729
145736147655
100.0000
gduggal-bwaplatINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
87.5758
78.1038
99.6623
73.9048
2076582206677
100.0000
cchapple-customINDELD1_5*homalt
99.7503
99.8385
99.6622
57.7109
488477948389164151
92.0732
gduggal-snapfbSNP*map_l125_m1_e0homalt
97.7543
95.9184
99.6620
74.9969
16215690162165521
38.1818
ckim-isaacSNPtimap_l125_m0_e0het
75.4138
60.6559
99.6620
78.2483
501232515012172
11.7647
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
97.6820
95.7792
99.6619
56.9975
118052117943
75.0000
jpowers-varprowlSNP*map_l150_m2_e0homalt
98.9410
98.2306
99.6618
76.3825
11492207114923926
66.6667
hfeng-pmm2INDELD1_5map_l100_m1_e0homalt
99.5773
99.4932
99.6616
80.9170
589358922
100.0000
bgallagher-sentieonINDELD1_5map_l100_m1_e0homalt
99.5773
99.4932
99.6616
83.0562
589358922
100.0000
astatham-gatkSNP*map_l125_m2_e0het
85.8236
75.3598
99.6616
80.7499
220947224220887527
36.0000
jli-customSNPtimap_l100_m2_e1*
99.5011
99.3412
99.6614
62.5257
491593264915716750
29.9401
ckim-isaacSNPtimap_l150_m2_e1het
75.7313
61.0680
99.6614
80.0450
794850677948273
11.1111
ltrigg-rtg1SNPtimap_l250_m2_e1homalt
99.6047
99.5485
99.6610
87.3743
17648176466
100.0000
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
92.6662
86.5889
99.6610
43.1599
2974629411
100.0000
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.7653
92.1626
99.6610
30.6426
439837444101515
100.0000
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7253
99.7898
99.6609
56.0602
6171136171212
9.5238
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4582
99.2565
99.6607
48.9520
2937222937101
10.0000
ghariani-varprowlSNP*map_l100_m1_e0homalt
99.3219
98.9853
99.6607
61.9023
26729274267299164
70.3297
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.9869
94.4529
99.6605
29.5910
10489616105693636
100.0000
dgrover-gatkINDELD1_5map_l100_m1_e0homalt
99.4073
99.1554
99.6604
83.4225
587558722
100.0000
hfeng-pmm3SNPtvsegdup*
99.7247
99.7890
99.6604
90.6553
8514188510295
17.2414
hfeng-pmm2INDEL*HG002complexvarhomalt
99.7542
99.8483
99.6603
56.1296
2698641269949286
93.4783
gduggal-snapvardSNP*func_cds*
99.3360
99.0138
99.6603
29.3432
17971179178956123
37.7049
gduggal-snapfbSNPtimap_l250_m1_e0homalt
95.2567
91.2259
99.6601
92.2128
1466141146654
80.0000
ckim-dragenINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.5100
99.3604
99.6600
70.5987
264117263892
22.2222
ckim-isaacSNP*lowcmp_SimpleRepeat_triTR_11to50het
97.1923
94.8440
99.6599
28.7215
43782384395150
0.0000
jpowers-varprowlSNP*map_l100_m2_e0homalt
99.3403
99.0226
99.6599
66.2832
27254269272549368
73.1183
jli-customSNPtimap_l100_m2_e0*
99.4978
99.3362
99.6598
62.5143
486363254863416650
30.1205
jpowers-varprowlSNP*map_l100_m2_e1homalt
99.3431
99.0286
99.6597
66.2636
27526270275269469
73.4043
bgallagher-sentieonINDELI1_5*het
99.6628
99.6660
99.6596
60.0640
7877726478760269153
56.8773
raldana-dualsentieonINDELD1_5map_l100_m1_e0homalt
99.2366
98.8176
99.6593
81.5176
585758522
100.0000
raldana-dualsentieonSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
98.0221
96.4380
99.6592
65.6762
146254146252
40.0000
hfeng-pmm1SNPtvmap_l125_m2_e0*
99.4866
99.3147
99.6592
71.0071
16376113163745616
28.5714
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.4090
99.1601
99.6591
54.8028
25146213251448660
69.7674
qzeng-customSNP**het
99.4239
99.1899
99.6590
25.4299
18584231517818500616331818
12.9205
asubramanian-gatkSNPtifunc_cdshet
99.6530
99.6472
99.6589
31.5760
8474308472291
3.4483
qzeng-customSNPtv**
99.4379
99.2180
99.6588
26.4392
96211575839586193282549
16.7276
jpowers-varprowlSNP*map_l250_m2_e1homalt
98.1703
96.7255
99.6588
90.0637
262989262995
55.5556
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.7386
93.9847
99.6588
27.1170
10437668105163636
100.0000
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.0853
96.5607
99.6588
36.0406
23696844236628158
71.6049
jmaeng-gatkINDELD1_5map_l100_m1_e0homalt
99.1511
98.6486
99.6587
83.2763
584858422
100.0000
ndellapenna-hhgaSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4006
99.1437
99.6587
62.2119
27441237274499460
63.8298