PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 361 362 363 364 365 366 367 368 369 ... 1720 1721 » 18201-18250 / 86044 show all
jli-custom	SNP	tv	map_siren	*	99.6133	99.5493	99.6773	55.0835	45723	207	45718	148	36	24.3243
ltrigg-rtg2	INDEL	*	map_l100_m2_e0	homalt	98.6382	97.6209	99.6769	78.6515	1231	30	1234	4	2	50.0000
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4966	99.3171	99.6769	61.8156	28067	193	28070	91	68	74.7253
bgallagher-sentieon	INDEL	D1_5	map_l100_m2_e1	homalt	99.5964	99.5161	99.6769	83.7873	617	3	617	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l100_m2_e1	homalt	99.5964	99.5161	99.6769	81.8369	617	3	617	2	2	100.0000
ckim-vqsr	INDEL	D1_5	*	*	99.5124	99.3485	99.6767	61.5493	145789	956	145843	473	318	67.2304
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.3979	97.1519	99.6764	72.8471	307	9	308	1	1	100.0000
gduggal-bwafb	SNP	*	map_l250_m0_e0	homalt	98.7971	97.9332	99.6764	93.3875	616	13	616	2	2	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.3979	97.1519	99.6764	72.8471	307	9	308	1	1	100.0000
ltrigg-rtg1	SNP	tv	map_siren	*	99.4402	99.2053	99.6762	52.0914	45565	365	45564	148	13	8.7838
dgrover-gatk	INDEL	D1_5	map_l100_m2_e1	homalt	99.4341	99.1935	99.6759	84.1347	615	5	615	2	2	100.0000
gduggal-bwafb	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2808	98.8889	99.6759	57.1851	27946	314	27984	91	76	83.5165
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	98.6633	97.6712	99.6756	43.8460	2139	51	2151	7	6	85.7143
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.6387	99.6019	99.6756	81.2035	10758	43	10754	35	19	54.2857
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3204	98.9679	99.6754	59.9358	19657	205	19650	64	45	70.3125
dgrover-gatk	INDEL	I1_5	*	*	99.5294	99.3841	99.6753	59.0782	149736	928	149786	488	385	78.8934
rpoplin-dv42	SNP	tv	HG002compoundhet	homalt	99.7491	99.8229	99.6753	42.8668	3382	6	3377	11	9	81.8182
jlack-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	98.8728	98.0831	99.6753	34.4681	307	6	307	1	1	100.0000
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6106	99.5460	99.6753	76.5566	1535	7	1535	5	3	60.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7833	99.8915	99.6753	78.2895	921	1	921	3	2	66.6667
dgrover-gatk	INDEL	*	HG002complexvar	*	99.5612	99.4476	99.6751	58.4475	76513	425	76380	249	210	84.3373
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.6996	97.7430	99.6751	54.6036	3681	85	3681	12	7	58.3333
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.6996	97.7430	99.6751	54.6036	3681	85	3681	12	7	58.3333
gduggal-bwafb	SNP	tv	map_l250_m2_e0	homalt	98.9247	98.1857	99.6750	89.2173	920	17	920	3	3	100.0000
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8372	100.0000	99.6750	69.7278	914	0	920	3	2	66.6667
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7677	99.8606	99.6750	47.8198	2149	3	2147	7	7	100.0000
cchapple-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1729	98.6761	99.6748	69.3950	32796	440	42603	139	118	84.8921
raldana-dualsentieon	INDEL	D1_5	map_l100_m2_e1	homalt	99.2713	98.8710	99.6748	82.3782	613	7	613	2	2	100.0000
jlack-gatk	SNP	*	map_l150_m0_e0	homalt	98.5532	97.4566	99.6748	74.6529	3985	104	3985	13	10	76.9231
jpowers-varprowl	SNP	*	map_siren	homalt	99.5443	99.4144	99.6746	55.8957	54833	323	54834	179	129	72.0670
astatham-gatk	INDEL	*	HG002complexvar	*	99.4827	99.2916	99.6745	58.3541	76393	545	76257	249	212	85.1406
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.0231	98.3802	99.6744	47.3579	3705	61	3674	12	9	75.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.0231	98.3802	99.6744	47.3579	3705	61	3674	12	9	75.0000
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7012	99.7281	99.6744	30.0294	7335	20	7346	24	4	16.6667
gduggal-snapfb	SNP	*	map_l125_m2_e1	homalt	97.8213	96.0358	99.6744	76.3853	16837	695	16838	55	21	38.1818
jmaeng-gatk	INDEL	D1_5	map_l100_m2_e1	homalt	99.1896	98.7097	99.6743	83.9687	612	8	612	2	2	100.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.0713	96.5190	99.6743	72.7111	305	11	306	1	1	100.0000
asubramanian-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.4622	99.2509	99.6743	63.1894	265	2	306	1	1	100.0000
mlin-fermikit	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	68.6099	52.3077	99.6743	49.0879	510	465	612	2	1	50.0000
ckim-gatk	INDEL	D1_5	*	homalt	99.8051	99.9366	99.6739	62.4819	48895	31	48902	160	157	98.1250
ckim-isaac	SNP	tv	map_l125_m2_e1	*	70.9236	55.0459	99.6739	73.8556	9169	7488	9171	30	9	30.0000
ckim-vqsr	INDEL	D1_5	*	homalt	99.7969	99.9203	99.6738	62.4858	48887	39	48894	160	157	98.1250
cchapple-custom	SNP	tv	*	*	99.7746	99.8756	99.6738	23.8746	968484	1206	967637	3167	250	7.8939
ckim-dragen	INDEL	D1_5	map_l100_m2_e1	homalt	99.1894	98.7097	99.6737	83.7831	612	8	611	2	2	100.0000
ndellapenna-hhga	SNP	tv	map_l150_m2_e1	*	98.9668	98.2699	99.6737	73.4886	11303	199	11303	37	17	45.9459
jli-custom	INDEL	*	*	hetalt	96.4996	93.5214	99.6737	57.4952	23602	1635	23825	78	76	97.4359
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.6169	99.5602	99.6736	72.0020	45501	201	45497	149	51	34.2282
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.6169	99.5602	99.6736	72.0020	45501	201	45497	149	51	34.2282
ckim-isaac	SNP	tv	map_l125_m0_e0	het	71.3076	55.5101	99.6736	79.7505	2443	1958	2443	8	1	12.5000
eyeh-varpipe	SNP	*	map_l250_m0_e0	homalt	99.6776	99.6820	99.6732	93.5320	627	2	610	2	2	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge