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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 354 355 356 357 358 359 360 361 362 ... 1720 1721 » 17851-17900 / 86044 show all
jmaeng-gatk	INDEL	D1_5	HG002complexvar	*	99.4486	99.1930	99.7055	58.6476	32451	264	32505	96	76	79.1667
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.7011	99.6968	99.7054	51.0387	11839	36	11844	35	16	45.7143
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	85.6059	75.0000	99.7054	26.4355	654	218	677	2	2	100.0000
ckim-dragen	SNP	tv	map_l150_m2_e0	homalt	99.5708	99.4367	99.7053	69.4134	4060	23	4060	12	10	83.3333
egarrison-hhga	SNP	ti	map_l125_m0_e0	het	98.9821	98.2694	99.7053	75.9224	8120	143	8120	24	10	41.6667
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.5761	89.9487	99.7053	41.1561	877	98	1015	3	3	100.0000
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8524	100.0000	99.7052	73.0058	1353	0	1353	4	1	25.0000
ltrigg-rtg2	SNP	*	map_l100_m2_e1	het	98.8788	98.0660	99.7052	53.2399	45991	907	45990	136	8	5.8824
ltrigg-rtg2	SNP	tv	HG002compoundhet	*	99.3414	98.9802	99.7052	44.7928	8832	91	8795	26	6	23.0769
egarrison-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.0846	98.4716	99.7052	68.3462	1353	21	1353	4	2	50.0000
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.2917	89.4359	99.7050	39.9291	872	103	1014	3	3	100.0000
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.1202	98.5423	99.7050	56.9250	338	5	338	1	0	0.0000
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.1917	89.2562	99.7050	47.1139	324	39	338	1	1	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5956	99.4864	99.7050	76.9975	1356	7	1352	4	2	50.0000
jlack-gatk	INDEL	*	HG002compoundhet	hetalt	94.2807	89.4162	99.7049	50.9823	22515	2665	22637	67	62	92.5373
jlack-gatk	SNP	tv	HG002compoundhet	homalt	99.7638	99.8229	99.7048	42.2900	3382	6	3377	10	9	90.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4113	99.1196	99.7048	77.3525	1351	12	1351	4	2	50.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4113	99.1196	99.7048	77.3525	1351	12	1351	4	2	50.0000
ckim-isaac	SNP	*	map_l150_m1_e0	*	70.0877	54.0364	99.7046	76.2708	16540	14069	16541	49	12	24.4898
bgallagher-sentieon	SNP	tv	*	het	99.8318	99.9594	99.7045	23.0898	591456	240	591385	1753	53	3.0234
rpoplin-dv42	SNP	ti	HG002compoundhet	het	99.5469	99.3898	99.7044	38.8720	9447	58	9445	28	22	78.5714
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.2313	98.7627	99.7044	62.6862	1357	17	1349	4	1	25.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5149	99.3263	99.7043	51.4820	11795	80	11800	35	21	60.0000
astatham-gatk	SNP	ti	map_l125_m2_e0	het	85.6054	75.0000	99.7041	80.6061	14157	4719	14153	42	19	45.2381
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.0377	88.9807	99.7041	43.6667	323	40	337	1	1	100.0000
jlack-gatk	INDEL	I1_5	HG002complexvar	hetalt	96.7853	94.0324	99.7041	70.7004	1623	103	1685	5	4	80.0000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.0377	88.9807	99.7041	43.6667	323	40	337	1	1	100.0000
ltrigg-rtg1	SNP	*	HG002compoundhet	het	98.6093	97.5384	99.7040	42.5144	13829	349	13809	41	9	21.9512
ckim-gatk	SNP	*	*	het	99.6800	99.6561	99.7039	26.8036	1867144	6443	1867021	5544	194	3.4993
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.7859	99.8680	99.7039	39.7224	18159	24	18186	54	6	11.1111
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.5109	97.3461	99.7039	72.1148	27950	762	27950	83	24	28.9157
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.5109	97.3461	99.7039	72.1148	27950	762	27950	83	24	28.9157
dgrover-gatk	INDEL	I1_5	*	het	99.6919	99.6799	99.7038	61.0342	78788	253	78770	234	135	57.6923
rpoplin-dv42	SNP	*	HG002compoundhet	homalt	99.7682	99.8331	99.7035	35.1268	10764	18	10759	32	29	90.6250
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.8494	96.0631	99.7034	51.2998	6637	272	6724	20	10	50.0000
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	hetalt	84.8193	73.8019	99.7033	31.3646	924	328	1008	3	3	100.0000
egarrison-hhga	SNP	tv	map_l125_m2_e1	het	99.1904	98.6828	99.7032	70.4601	10414	139	10414	31	12	38.7097
ltrigg-rtg1	SNP	*	map_l100_m2_e0	het	98.9994	98.3060	99.7027	57.0672	45613	786	45611	136	12	8.8235
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	96.4391	93.3824	99.7027	51.0669	1016	72	1006	3	3	100.0000
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	hetalt	84.5547	73.4026	99.7027	31.1263	919	333	1006	3	3	100.0000
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.5925	99.4826	99.7026	70.3810	1346	7	1341	4	3	75.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	98.2405	96.8208	99.7024	70.0000	335	11	335	1	0	0.0000
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7395	99.7766	99.7024	56.2348	14737	33	14739	44	17	38.6364
astatham-gatk	SNP	tv	map_l125_m2_e1	*	91.4416	84.4450	99.7023	76.7879	14066	2591	14064	42	14	33.3333
asubramanian-gatk	SNP	*	map_l150_m2_e0	*	40.2806	25.2386	99.7022	94.5086	8039	23813	8036	24	6	25.0000
gduggal-bwafb	SNP	*	*	*	99.7820	99.8619	99.7021	21.9848	3050417	4217	3050656	9115	775	8.5025
ndellapenna-hhga	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3259	98.9526	99.7019	63.0961	17384	184	17391	52	20	38.4615
dgrover-gatk	INDEL	D1_5	*	*	99.6144	99.5271	99.7018	60.8244	146051	694	146107	437	317	72.5400
qzeng-custom	SNP	*	func_cds	*	99.7598	99.8182	99.7016	28.7413	18117	33	18040	54	4	7.4074
asubramanian-gatk	SNP	tv	map_l125_m0_e0	het	37.0699	22.7676	99.7015	96.2071	1002	3399	1002	3	1	33.3333

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