PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17801-17850 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.3487 | 98.9909 | 99.7091 | 60.6090 | 4807 | 49 | 4798 | 14 | 2 | 14.2857 | |
| rpoplin-dv42 | SNP | * | HG002compoundhet | * | 99.6493 | 99.5895 | 99.7091 | 40.7188 | 25716 | 106 | 25707 | 75 | 61 | 81.3333 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m0_e0 | * | 94.4251 | 89.6732 | 99.7089 | 83.7895 | 686 | 79 | 685 | 2 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | map_l150_m2_e1 | homalt | 99.5761 | 99.4436 | 99.7089 | 69.3912 | 4111 | 23 | 4111 | 12 | 10 | 83.3333 | |
| ckim-gatk | SNP | * | HG002compoundhet | het | 99.3772 | 99.0478 | 99.7088 | 46.6510 | 14043 | 135 | 14041 | 41 | 28 | 68.2927 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 94.6440 | 90.0688 | 99.7088 | 29.5734 | 6149 | 678 | 1712 | 5 | 5 | 100.0000 | |
| astatham-gatk | INDEL | * | * | hetalt | 96.8001 | 94.0563 | 99.7088 | 58.1664 | 23737 | 1500 | 23968 | 70 | 69 | 98.5714 | |
| ndellapenna-hhga | SNP | * | map_l125_m2_e0 | het | 98.8614 | 98.0285 | 99.7086 | 70.3185 | 28740 | 578 | 28740 | 84 | 36 | 42.8571 | |
| egarrison-hhga | SNP | * | map_l150_m2_e0 | het | 99.1156 | 98.5298 | 99.7085 | 75.6800 | 19837 | 296 | 19837 | 58 | 22 | 37.9310 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 95.4063 | 91.4601 | 99.7085 | 54.4489 | 332 | 31 | 342 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l125_m2_e1 | het | 98.8584 | 98.0229 | 99.7083 | 70.3755 | 29054 | 586 | 29054 | 85 | 36 | 42.3529 | |
| rpoplin-dv42 | SNP | tv | HG002compoundhet | * | 99.6523 | 99.5965 | 99.7081 | 48.4905 | 8887 | 36 | 8880 | 26 | 19 | 73.0769 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.9025 | 98.1098 | 99.7081 | 39.8904 | 2751 | 53 | 2733 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.6588 | 95.6920 | 99.7081 | 53.9605 | 5642 | 254 | 5807 | 17 | 17 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.6588 | 95.6920 | 99.7081 | 53.9605 | 5642 | 254 | 5807 | 17 | 17 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | map_siren | * | 99.6860 | 99.6642 | 99.7079 | 54.6933 | 100018 | 337 | 100003 | 293 | 39 | 13.3106 | |
| ckim-isaac | SNP | * | map_l150_m2_e0 | * | 70.6023 | 54.6496 | 99.7079 | 77.9961 | 17407 | 14445 | 17408 | 51 | 12 | 23.5294 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e0 | het | 98.7273 | 97.7659 | 99.7078 | 62.2269 | 28663 | 655 | 28664 | 84 | 12 | 14.2857 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 78.9725 | 65.3768 | 99.7076 | 29.3388 | 321 | 170 | 341 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5620 | 99.4169 | 99.7076 | 57.3034 | 341 | 2 | 341 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.9543 | 90.6336 | 99.7076 | 43.5644 | 329 | 34 | 341 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | * | homalt | 99.7668 | 99.8262 | 99.7075 | 52.8322 | 60323 | 105 | 60327 | 177 | 174 | 98.3051 | |
| jpowers-varprowl | SNP | tv | func_cds | homalt | 99.8535 | 100.0000 | 99.7074 | 29.3802 | 1704 | 0 | 1704 | 5 | 5 | 100.0000 | |
| astatham-gatk | SNP | ti | map_l125_m2_e1 | het | 85.6126 | 75.0092 | 99.7074 | 80.6356 | 14317 | 4770 | 14313 | 42 | 19 | 45.2381 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.5545 | 74.9201 | 99.7073 | 29.8906 | 938 | 314 | 1022 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | SNP | * | map_l150_m2_e1 | * | 40.4494 | 25.3710 | 99.7071 | 94.4964 | 8172 | 24038 | 8169 | 24 | 6 | 25.0000 | |
| egarrison-hhga | SNP | * | map_l150_m2_e1 | het | 99.1207 | 98.5415 | 99.7068 | 75.7393 | 20066 | 297 | 20066 | 59 | 22 | 37.2881 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.4984 | 89.8072 | 99.7067 | 47.0497 | 326 | 37 | 340 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.6971 | 97.7077 | 99.7067 | 78.8724 | 341 | 8 | 340 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.4316 | 99.1580 | 99.7066 | 64.6054 | 3062 | 26 | 3059 | 9 | 2 | 22.2222 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9153 | 98.1365 | 99.7066 | 60.6969 | 10901 | 207 | 10875 | 32 | 10 | 31.2500 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | * | 98.8489 | 98.0061 | 99.7063 | 58.4119 | 10863 | 221 | 10862 | 32 | 6 | 18.7500 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | * | 98.4887 | 97.3006 | 99.7063 | 64.1567 | 6452 | 179 | 6450 | 19 | 4 | 21.0526 | |
| hfeng-pmm1 | SNP | tv | map_l150_m2_e0 | homalt | 99.7184 | 99.7306 | 99.7062 | 73.9873 | 4072 | 11 | 4072 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | SNP | tv | map_l150_m2_e0 | homalt | 99.7184 | 99.7306 | 99.7062 | 74.0814 | 4072 | 11 | 4072 | 12 | 4 | 33.3333 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.5197 | 89.8462 | 99.7062 | 40.7085 | 876 | 99 | 1018 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6329 | 99.5598 | 99.7061 | 77.3995 | 1357 | 6 | 1357 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | * | * | * | 99.0160 | 98.3355 | 99.7061 | 56.0561 | 338806 | 5735 | 338554 | 998 | 454 | 45.4910 | |
| ckim-gatk | SNP | tv | HG002compoundhet | * | 99.2966 | 98.8905 | 99.7061 | 49.4688 | 8824 | 99 | 8821 | 26 | 17 | 65.3846 | |
| hfeng-pmm3 | SNP | tv | map_l150_m2_e0 | homalt | 99.6815 | 99.6571 | 99.7060 | 73.9183 | 4069 | 14 | 4069 | 12 | 4 | 33.3333 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5960 | 99.4864 | 99.7059 | 76.5153 | 1356 | 7 | 1356 | 4 | 1 | 25.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | HG002complexvar | hetalt | 96.7847 | 94.0299 | 99.7059 | 69.0909 | 315 | 20 | 339 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5960 | 99.4864 | 99.7059 | 77.2003 | 1356 | 7 | 1356 | 4 | 2 | 50.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5960 | 99.4864 | 99.7059 | 77.3522 | 1356 | 7 | 1356 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5960 | 99.4864 | 99.7059 | 77.5541 | 1356 | 7 | 1356 | 4 | 2 | 50.0000 | |
| jli-custom | SNP | * | HG002compoundhet | * | 99.7328 | 99.7599 | 99.7058 | 41.1267 | 25760 | 62 | 25757 | 76 | 36 | 47.3684 | |
| astatham-gatk | SNP | * | map_l100_m0_e0 | * | 92.7245 | 86.6569 | 99.7057 | 72.7426 | 28459 | 4382 | 28455 | 84 | 35 | 41.6667 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7495 | 99.7934 | 99.7056 | 64.6549 | 966 | 2 | 1016 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.2919 | 89.4359 | 99.7056 | 40.6868 | 872 | 103 | 1016 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | SNP | * | HG002compoundhet | homalt | 91.3621 | 84.3072 | 99.7055 | 35.4356 | 9090 | 1692 | 7788 | 23 | 19 | 82.6087 | |