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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 352 353 354 355 356 357 358 359 360 ... 1720 1721 » 17751-17800 / 86044 show all
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8557	100.0000	99.7118	79.2216	346	0	346	1	1	100.0000
eyeh-varpipe	SNP	tv	map_l100_m0_e0	homalt	99.7129	99.7140	99.7118	68.3997	3835	11	3806	11	3	27.2727
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.8784	96.1111	99.7118	87.9785	692	28	692	2	2	100.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8557	100.0000	99.7118	79.1842	346	0	346	1	1	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8557	100.0000	99.7118	79.1717	346	0	346	1	1	100.0000
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7114	99.7110	99.7118	79.0838	345	1	346	1	1	100.0000
dgrover-gatk	SNP	*	map_l250_m1_e0	homalt	98.9982	98.2948	99.7117	85.6084	2421	42	2421	7	5	71.4286
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7791	99.8466	99.7116	58.4535	11067	17	11063	32	3	9.3750
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.1381	98.5714	99.7113	61.0570	1035	15	1036	3	3	100.0000
jli-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.6872	99.6632	99.7112	69.9339	6215	21	6215	18	12	66.6667
ndellapenna-hhga	SNP	ti	map_l150_m1_e0	het	98.6644	97.6395	99.7111	73.7513	12078	292	12078	35	17	48.5714
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	98.9247	98.1508	99.7110	42.4771	690	13	690	2	1	50.0000
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	90.7441	83.2569	99.7110	70.5030	363	73	345	1	1	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.0897	98.4762	99.7110	62.4593	1034	16	1035	3	3	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8553	100.0000	99.7110	78.9538	346	0	345	1	1	100.0000
astatham-gatk	INDEL	I1_5	*	het	99.5857	99.4610	99.7107	60.4880	78615	426	78596	228	141	61.8421
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.6240	99.5376	99.7106	36.1655	1722	8	1723	5	5	100.0000
rpoplin-dv42	INDEL	D1_5	segdup	het	99.4935	99.2775	99.7106	94.2248	687	5	689	2	2	100.0000
egarrison-hhga	SNP	tv	map_l125_m1_e0	het	99.1809	98.6569	99.7105	68.8561	9990	136	9990	29	12	41.3793
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.7972	99.8841	99.7104	37.7838	3446	4	3443	10	2	20.0000
rpoplin-dv42	INDEL	D1_5	HG002complexvar	het	99.5249	99.3402	99.7103	55.5097	20628	137	20652	60	48	80.0000
ltrigg-rtg1	INDEL	D1_5	*	het	99.2847	98.8627	99.7103	52.7629	86578	996	86378	251	52	20.7171
jmaeng-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	98.9445	98.1905	99.7101	62.6893	1031	19	1032	3	3	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	98.9445	98.1905	99.7101	62.5272	1031	19	1032	3	3	100.0000
asubramanian-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.7907	95.9438	99.7101	42.8335	615	26	688	2	1	50.0000
jli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.2812	96.8927	99.7101	66.5373	343	11	344	1	1	100.0000
jlack-gatk	INDEL	D1_5	map_l125_m1_e0	homalt	99.1354	98.5673	99.7101	84.2033	344	5	344	1	1	100.0000
ndellapenna-hhga	SNP	ti	map_l150_m2_e1	het	98.7157	97.7411	99.7100	75.1509	12721	294	12721	37	17	45.9459
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5098	99.3105	99.7100	37.0828	10658	74	10658	31	2	6.4516
raldana-dualsentieon	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	98.9443	98.1905	99.7099	59.8758	1031	19	1031	3	3	100.0000
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7099	99.7098	99.7099	59.0011	28178	82	28181	82	31	37.8049
hfeng-pmm1	SNP	tv	map_l150_m2_e1	homalt	99.7219	99.7339	99.7098	73.9872	4123	11	4123	12	4	33.3333
hfeng-pmm2	SNP	tv	map_l150_m2_e1	homalt	99.7219	99.7339	99.7098	74.0785	4123	11	4123	12	4	33.3333
ltrigg-rtg1	SNP	tv	map_l250_m2_e0	*	97.5357	95.4545	99.7097	82.4960	2751	131	2748	8	3	37.5000
hfeng-pmm3	SNP	tv	map_l150_m2_e1	homalt	99.6855	99.6613	99.7096	73.9141	4120	14	4120	12	4	33.3333
hfeng-pmm2	INDEL	I1_5	*	het	99.6023	99.4952	99.7096	59.9116	78642	399	78624	229	130	56.7686
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.4204	99.1329	99.7095	36.8209	1715	15	1716	5	4	80.0000
dgrover-gatk	INDEL	*	*	hetalt	96.9073	94.2584	99.7094	58.4640	23788	1449	24018	70	68	97.1429
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8544	100.0000	99.7093	57.2671	343	0	343	1	0	0.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8544	100.0000	99.7093	57.0537	343	0	343	1	0	0.0000
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8544	100.0000	99.7093	57.3201	343	0	343	1	0	0.0000
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8544	100.0000	99.7093	56.1224	343	0	343	1	0	0.0000
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8544	100.0000	99.7093	55.8974	343	0	343	1	0	0.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8544	100.0000	99.7093	57.2671	343	0	343	1	0	0.0000
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4305	99.1533	99.7093	77.3336	1054	9	1029	3	3	100.0000
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.3123	98.9185	99.7093	62.6392	1372	15	1372	4	0	0.0000
gduggal-bwafb	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6007	99.4924	99.7093	41.1337	2744	14	2744	8	5	62.5000
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8544	100.0000	99.7093	57.0537	343	0	343	1	0	0.0000
ckim-dragen	SNP	ti	map_l125_m0_e0	homalt	99.4419	99.1761	99.7092	62.9046	4454	37	4457	13	12	92.3077
ltrigg-rtg1	SNP	ti	map_l150_m0_e0	homalt	99.5282	99.3481	99.7091	74.5205	2743	18	2742	8	8	100.0000

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