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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 350 351 352 353 354 355 356 357 358 ... 1720 1721 » 17651-17700 / 86044 show all
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4749	99.2317	99.7192	49.7413	4262	33	4262	12	1	8.3333
ltrigg-rtg2	INDEL	D1_5	map_l125_m2_e0	homalt	98.7513	97.8022	99.7191	80.2770	356	8	355	1	1	100.0000
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.8125	99.9061	99.7191	40.4113	7445	7	7455	21	2	9.5238
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	88.0242	78.7844	99.7191	26.2176	687	185	710	2	2	100.0000
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	88.0242	78.7844	99.7191	26.3702	687	185	710	2	2	100.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.8422	97.9805	99.7191	81.0931	6744	139	6744	19	10	52.6316
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	88.0242	78.7844	99.7191	26.2176	687	185	710	2	2	100.0000
rpoplin-dv42	SNP	*	map_l150_m2_e1	homalt	99.3508	98.9854	99.7189	73.6505	11707	120	11707	33	32	96.9697
jmaeng-gatk	SNP	tv	HG002compoundhet	het	99.2149	98.7160	99.7189	56.1374	4613	60	4611	13	11	84.6154
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.8159	99.9133	99.7187	39.4602	4612	4	4608	13	3	23.0769
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.8389	99.9596	99.7185	33.2528	2477	1	2480	7	3	42.8571
gduggal-snapvard	SNP	*	map_l150_m1_e0	homalt	97.6436	95.6533	99.7185	71.0895	10783	490	10627	30	24	80.0000
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8120	99.9059	99.7183	81.3713	1062	1	1062	3	1	33.3333
cchapple-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.0233	98.3380	99.7183	57.9882	355	6	354	1	1	100.0000
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8120	99.9059	99.7183	81.2335	1062	1	1062	3	1	33.3333
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	78.2556	64.3957	99.7182	32.7011	5983	3308	6015	17	17	100.0000
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	78.2556	64.3957	99.7182	32.7011	5983	3308	6015	17	17	100.0000
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.6572	99.5964	99.7181	27.1206	2468	10	2476	7	0	0.0000
jli-custom	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.7984	99.8789	99.7181	29.8389	2475	3	2476	7	0	0.0000
ckim-gatk	INDEL	D1_5	HG002complexvar	*	99.5163	99.3153	99.7181	58.5688	32491	224	32545	92	72	78.2609
jli-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3263	98.9377	99.7181	59.8869	10990	118	10964	31	12	38.7097
egarrison-hhga	SNP	tv	map_l100_m0_e0	*	99.2887	98.8632	99.7179	67.1372	10958	126	10958	31	14	45.1613
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	77.6790	63.6186	99.7178	29.4964	4564	2610	4593	13	13	100.0000
astatham-gatk	SNP	ti	map_l150_m1_e0	*	91.3534	84.2837	99.7178	78.6410	16614	3098	16610	47	26	55.3191
hfeng-pmm1	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	98.7723	97.8448	99.7176	64.7729	3178	70	3178	9	0	0.0000
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.6954	99.6733	99.7175	49.5386	6711	22	6707	19	12	63.1579
ckim-isaac	SNP	*	map_l100_m0_e0	het	77.3393	63.1643	99.7172	71.7888	13394	7811	13397	38	6	15.7895
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8455	99.9742	99.7171	60.4476	3877	1	3877	11	0	0.0000
qzeng-custom	SNP	ti	func_cds	*	99.7894	99.8622	99.7168	26.7032	13768	19	13732	39	4	10.2564
ndellapenna-hhga	SNP	*	map_l125_m1_e0	het	98.8381	97.9748	99.7168	68.7996	27817	575	27817	79	36	45.5696
egarrison-hhga	SNP	ti	map_l150_m0_e0	*	99.1041	98.4989	99.7167	79.0350	7743	118	7743	22	10	45.4545
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4338	99.1525	99.7167	70.3361	351	3	352	1	1	100.0000
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4338	99.1525	99.7167	70.1606	351	3	352	1	1	100.0000
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.7409	97.7839	99.7167	56.1491	353	8	352	1	1	100.0000
qzeng-custom	SNP	ti	*	het	99.4567	99.1981	99.7166	23.5601	1271618	10279	1269681	3608	520	14.4124
rpoplin-dv42	SNP	ti	HG002compoundhet	homalt	99.7770	99.8377	99.7163	30.8389	7382	12	7382	21	20	95.2381
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	77.7879	63.7655	99.7160	28.7405	4535	2577	4564	13	13	100.0000
rpoplin-dv42	SNP	*	map_l150_m2_e0	homalt	99.3437	98.9743	99.7158	73.6127	11579	120	11579	33	32	96.9697
rpoplin-dv42	SNP	tv	segdup	het	99.6497	99.5839	99.7157	91.3241	5265	22	5261	15	0	0.0000
hfeng-pmm3	INDEL	I1_5	segdup	*	99.4321	99.1501	99.7156	94.0254	1050	9	1052	3	2	66.6667
ltrigg-rtg2	INDEL	D1_5	*	*	99.4769	99.2395	99.7155	55.7210	145629	1116	145463	415	145	34.9398
raldana-dualsentieon	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.1057	98.5033	99.7155	36.0522	2106	32	2103	6	2	33.3333
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7987	99.8821	99.7155	54.3488	10166	12	10164	29	24	82.7586
ltrigg-rtg2	SNP	tv	map_l125_m2_e0	het	98.4778	97.2706	99.7153	57.2310	10157	285	10156	29	2	6.8966
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5220	99.3296	99.7152	58.2062	3852	26	3852	11	4	36.3636
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	95.4306	91.4992	99.7150	67.7457	4962	461	4898	14	5	35.7143
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	95.4306	91.4992	99.7150	67.7457	4962	461	4898	14	5	35.7143
ndellapenna-hhga	SNP	ti	map_l150_m2_e0	het	98.7101	97.7253	99.7148	75.0553	12588	293	12588	36	17	47.2222
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.0431	98.3803	99.7148	74.9713	14335	236	14335	41	7	17.0732
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.0431	98.3803	99.7148	74.9713	14335	236	14335	41	7	17.0732

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