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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 346 347 348 349 350 351 352 353 354 ... 1720 1721 » 17451-17500 / 86044 show all
asubramanian-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.4476	99.1594	99.7375	38.8443	3421	29	3420	9	2	22.2222
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4764	99.2167	99.7375	83.4131	380	3	380	1	1	100.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4764	99.2167	99.7375	82.5868	380	3	380	1	1	100.0000
ckim-isaac	SNP	tv	map_l150_m0_e0	het	69.6130	53.4647	99.7375	84.2187	1520	1323	1520	4	1	25.0000
ltrigg-rtg1	SNP	ti	map_l150_m0_e0	*	98.1783	96.6671	99.7375	70.0220	7599	262	7598	20	11	55.0000
jli-custom	SNP	ti	map_siren	*	99.6599	99.5825	99.7375	51.1882	99936	419	99929	263	66	25.0951
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.7593	99.7812	99.7374	46.7118	2280	5	2279	6	2	33.3333
ckim-isaac	SNP	ti	map_l125_m0_e0	*	72.1772	56.5507	99.7374	74.7461	7217	5545	7217	19	4	21.0526
ckim-vqsr	SNP	tv	HG002compoundhet	*	98.8066	97.8931	99.7373	49.7301	8735	188	8732	23	15	65.2174
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.6717	99.6061	99.7373	45.9408	2276	9	2278	6	3	50.0000
ckim-dragen	SNP	ti	HG002compoundhet	het	99.7319	99.7265	99.7373	40.1998	9479	26	9491	25	5	20.0000
gduggal-bwafb	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.2884	98.8435	99.7372	57.4242	16239	190	16321	43	29	67.4419
jlack-gatk	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	89.1544	80.6020	99.7372	41.6858	723	174	759	2	2	100.0000
hfeng-pmm3	SNP	*	map_l100_m1_e0	*	99.6620	99.5870	99.7371	63.4436	72104	299	72093	190	31	16.3158
hfeng-pmm2	SNP	tv	func_cds	het	99.8684	100.0000	99.7371	30.5787	2657	0	2656	7	0	0.0000
ndellapenna-hhga	SNP	ti	map_l100_m0_e0	het	98.6920	97.6686	99.7371	67.9732	13657	326	13658	36	19	52.7778
dgrover-gatk	SNP	tv	func_cds	het	99.8496	99.9624	99.7370	32.6247	2656	1	2655	7	0	0.0000
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7530	99.7694	99.7366	55.3284	6058	14	6058	16	16	100.0000
astatham-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	98.8731	98.0246	99.7364	69.1784	3027	61	3027	8	7	87.5000
asubramanian-gatk	SNP	*	map_l125_m0_e0	het	38.5630	23.9024	99.7364	95.6908	3027	9637	3027	8	5	62.5000
rpoplin-dv42	SNP	ti	map_siren	het	99.5664	99.3973	99.7362	53.8516	62006	376	61997	164	94	57.3171
ckim-isaac	SNP	ti	map_l150_m2_e1	*	72.1848	56.5603	99.7362	77.6680	11721	9002	11721	31	7	22.5806
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2639	98.7961	99.7361	66.9655	2626	32	2646	7	4	57.1429
ltrigg-rtg1	SNP	*	map_l250_m2_e0	*	97.7096	95.7641	99.7358	83.5094	7551	334	7551	20	10	50.0000
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.7395	97.7629	99.7358	42.4788	2622	60	2643	7	7	100.0000
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	89.8810	81.7985	99.7358	39.7772	755	168	755	2	2	100.0000
dgrover-gatk	SNP	*	map_l250_m2_e0	homalt	99.0440	98.3619	99.7357	86.6145	2642	44	2642	7	5	71.4286
rpoplin-dv42	SNP	*	map_siren	*	99.6224	99.5097	99.7354	54.5067	145511	717	145497	386	225	58.2902
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7580	99.7808	99.7353	72.9432	21851	48	21851	58	58	100.0000
ltrigg-rtg1	SNP	ti	map_l125_m2_e0	het	98.7318	97.7485	99.7352	62.6803	18451	425	18453	49	7	14.2857
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7615	99.7879	99.7350	71.4307	1882	4	1882	5	4	80.0000
gduggal-bwaplat	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	87.7025	78.2609	99.7349	69.6723	7902	2195	7900	21	19	90.4762
ckim-dragen	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6778	99.6209	99.7347	74.4322	33110	126	33088	88	54	61.3636
jli-custom	INDEL	I6_15	HG002complexvar	het	98.4497	97.1975	99.7346	57.2913	2289	66	2255	6	1	16.6667
ltrigg-rtg1	SNP	ti	map_l100_m2_e1	het	99.0241	98.3236	99.7346	57.0635	30441	519	30443	81	7	8.6420
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	82.8097	70.7958	99.7345	26.8052	4875	2011	4883	13	13	100.0000
ckim-isaac	SNP	*	map_l150_m0_e0	*	69.2458	53.0336	99.7343	81.0939	6381	5651	6381	17	4	23.5294
ltrigg-rtg1	SNP	*	map_l150_m1_e0	het	98.3972	97.0957	99.7341	63.5971	18755	561	18755	50	9	18.0000
hfeng-pmm3	INDEL	*	HG002complexvar	homalt	99.7967	99.8594	99.7340	55.8371	26989	38	26999	72	66	91.6667
ltrigg-rtg1	SNP	*	map_l125_m1_e0	het	98.7065	97.7001	99.7339	59.7345	27739	653	27739	74	12	16.2162
hfeng-pmm1	SNP	ti	map_l100_m2_e0	het	99.3987	99.0660	99.7336	64.8032	30336	286	30329	81	20	24.6914
hfeng-pmm1	SNP	ti	map_l100_m2_e1	het	99.4037	99.0762	99.7333	64.8020	30674	286	30667	82	20	24.3902
jli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	98.8616	98.0050	99.7333	77.0080	393	8	374	1	1	100.0000
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8665	100.0000	99.7333	58.1006	374	0	374	1	0	0.0000
ltrigg-rtg1	SNP	*	map_siren	*	99.4858	99.2395	99.7333	50.0979	145115	1112	145108	388	49	12.6289
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8665	100.0000	99.7333	59.5032	374	0	374	1	0	0.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8665	100.0000	99.7333	59.5032	374	0	374	1	0	0.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8665	100.0000	99.7333	59.5032	374	0	374	1	0	0.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8665	100.0000	99.7333	59.4595	374	0	374	1	0	0.0000
mlin-fermikit	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	56.8303	39.7366	99.7333	37.6559	724	1098	748	2	2	100.0000

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