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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 345 346 347 348 349 350 351 352 353 ... 1720 1721 » 17401-17450 / 86044 show all
asubramanian-gatk	SNP	tv	map_l125_m2_e0	het	49.8851	33.2599	99.7415	93.1706	3473	6969	3472	9	2	22.2222
rpoplin-dv42	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3981	99.0572	99.7414	71.0854	30471	290	30469	79	73	92.4051
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.1804	98.6259	99.7411	70.8758	45074	628	45075	117	14	11.9658
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.1804	98.6259	99.7411	70.8758	45074	628	45075	117	14	11.9658
ckim-gatk	INDEL	I1_5	HG002complexvar	hetalt	92.1829	85.6895	99.7411	68.7184	1479	247	1541	4	4	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6764	99.6119	99.7409	78.6563	770	3	770	2	0	0.0000
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6764	99.6119	99.7409	78.4116	770	3	770	2	0	0.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6764	99.6119	99.7409	78.2474	770	3	770	2	0	0.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6764	99.6119	99.7409	78.6681	770	3	770	2	0	0.0000
ckim-vqsr	INDEL	I1_5	HG002complexvar	hetalt	92.1493	85.6315	99.7409	68.7323	1478	248	1540	4	4	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6764	99.6119	99.7409	78.6563	770	3	770	2	0	0.0000
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.3994	93.2746	99.7407	59.0297	1165	84	1154	3	3	100.0000
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.3994	93.2746	99.7407	59.0297	1165	84	1154	3	3	100.0000
asubramanian-gatk	INDEL	I1_5	map_siren	homalt	97.1653	94.7195	99.7407	79.1155	1148	64	1154	3	2	66.6667
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2861	98.8357	99.7406	78.6722	764	9	769	2	0	0.0000
jlack-gatk	SNP	ti	map_l150_m0_e0	homalt	98.6081	97.5009	99.7406	73.6452	2692	69	2692	7	6	85.7143
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6114	99.4825	99.7406	76.8607	769	4	769	2	0	0.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6114	99.4825	99.7406	77.9336	769	4	769	2	0	0.0000
asubramanian-gatk	SNP	*	func_cds	*	99.6470	99.5537	99.7405	30.0602	18069	81	18066	47	1	2.1277
egarrison-hhga	SNP	tv	map_l100_m2_e1	het	99.3132	98.8894	99.7405	65.3943	15761	177	15761	41	13	31.7073
jli-custom	INDEL	I1_5	map_l100_m1_e0	het	99.1589	98.5843	99.7403	82.0596	766	11	768	2	0	0.0000
ckim-dragen	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3532	98.9691	99.7403	76.7652	384	4	384	1	1	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6112	99.4825	99.7403	78.0188	769	4	768	2	0	0.0000
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	80.4581	67.4235	99.7403	24.8984	4603	2224	4609	12	12	100.0000
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.4583	97.2091	99.7401	57.5217	17659	507	17653	46	39	84.7826
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.4583	97.2091	99.7401	57.5217	17659	507	17653	46	39	84.7826
bgallagher-sentieon	INDEL	D1_5	HG002complexvar	*	99.6177	99.4956	99.7400	58.4446	32550	165	32605	85	76	89.4118
rpoplin-dv42	SNP	*	map_l100_m0_e0	homalt	99.3564	98.9759	99.7398	62.7443	11501	119	11501	30	27	90.0000
rpoplin-dv42	SNP	*	segdup	homalt	99.8140	99.8883	99.7398	89.1939	10731	12	10731	28	28	100.0000
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	97.8272	95.9868	99.7397	74.0574	2320	97	2299	6	4	66.6667
ltrigg-rtg2	INDEL	I1_5	*	hetalt	98.3546	97.0076	99.7395	72.4903	10860	335	11105	29	29	100.0000
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.8636	98.0031	99.7394	39.6351	1914	39	1914	5	4	80.0000
rpoplin-dv42	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	92.3921	86.0531	99.7392	40.4272	1524	247	1530	4	4	100.0000
jmaeng-gatk	INDEL	I1_5	HG002complexvar	hetalt	91.9469	85.2839	99.7392	69.0289	1472	254	1530	4	4	100.0000
ckim-vqsr	INDEL	D1_5	HG002complexvar	*	99.4499	99.1625	99.7391	58.6120	32441	274	32494	85	69	81.1765
raldana-dualsentieon	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3531	98.9700	99.7391	58.7473	55058	573	55048	144	22	15.2778
mlin-fermikit	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	83.5892	71.9405	99.7391	27.4753	3433	1339	3441	9	9	100.0000
dgrover-gatk	SNP	*	map_l250_m2_e1	homalt	99.0554	98.3812	99.7389	86.6637	2674	44	2674	7	5	71.4286
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.7010	99.6632	99.7389	50.8366	11835	40	11840	31	16	51.6129
hfeng-pmm3	SNP	*	map_l100_m2_e1	*	99.6666	99.5946	99.7387	65.1913	74434	303	74423	195	31	15.8974
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3817	99.0272	99.7387	76.7007	1527	15	1527	4	3	75.0000
hfeng-pmm3	SNP	*	map_l100_m2_e0	*	99.6651	99.5917	99.7386	65.1842	73662	302	73651	193	31	16.0622
jli-custom	INDEL	*	HG002complexvar	*	99.2454	98.7574	99.7382	56.8994	75982	956	75827	199	151	75.8794
gduggal-bwavard	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	62.0743	45.0588	99.7382	47.8142	383	467	381	1	1	100.0000
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	95.9599	92.4574	99.7382	69.8024	380	31	381	1	1	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6078	99.4778	99.7382	83.1048	381	2	381	1	1	100.0000
ltrigg-rtg1	SNP	ti	map_l125_m2_e1	het	98.7433	97.7681	99.7381	62.7777	18661	426	18663	49	7	14.2857
ltrigg-rtg1	SNP	tv	map_l100_m2_e0	*	99.2918	98.8495	99.7380	59.7315	24745	288	24740	65	9	13.8462
egarrison-hhga	SNP	tv	map_l100_m2_e0	het	99.3093	98.8845	99.7379	65.3478	15601	176	15601	41	13	31.7073
gduggal-bwaplat	INDEL	I1_5	HG002compoundhet	hetalt	83.2751	71.4771	99.7378	70.8280	7989	3188	7987	21	17	80.9524

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